<?xml version="1.0" encoding="UTF-8"?>
<data xmlns="http://www.aopkb.org/aop-xml">
  <chemical id="d7484a58-ef60-4a44-9382-1c8a2b781cd9">
    <casrn>115-86-6</casrn>
    <jchem-inchi-key>XZZNDPSIHUTMOC-UHFFFAOYSA-N</jchem-inchi-key>
    <indigo-inchi-key>XZZNDPSIHUTMOC-UHFFFAOYSA-N</indigo-inchi-key>
    <preferred-name>Triphenyl phosphate</preferred-name>
    <synonyms>
      <synonym>Phosphoric acid, triphenyl ester</synonym>
      <synonym>Celluflex TPP</synonym>
      <synonym>Disflamoll TP</synonym>
      <synonym>fosfato de trifenilo</synonym>
      <synonym>NSC 57868</synonym>
      <synonym>Phenyl phosphate</synonym>
      <synonym>Phoscon FR 903N</synonym>
      <synonym>Phosflex TPP</synonym>
      <synonym>Phosphate de triphenyle</synonym>
      <synonym>Reofos TPP</synonym>
      <synonym>Sumilizer TPP</synonym>
      <synonym>Triphenoxyphosphine oxide</synonym>
      <synonym>Triphenylphosphat</synonym>
      <synonym>Triphenylphosphate</synonym>
      <synonym>Wako TPP</synonym>
    </synonyms>
    <dsstox-id>DTXSID1021952</dsstox-id>
  </chemical>
  <biological-object id="fd1332a3-5944-4d86-8087-11bbd87589a3">
    <source-id>CHEBI:60311</source-id>
    <source>CHEBI</source>
    <name>thyroid hormone</name>
  </biological-object>
  <biological-object id="0cc0807a-3176-4ffe-905b-5a674af7dc63">
    <source-id>PR:000029191</source-id>
    <source>PR</source>
    <name>cell cycle-related cyclin</name>
  </biological-object>
  <biological-process id="da60bd4b-41ae-4686-b5a4-989aba9c16a0">
    <source-id>GO:0006810</source-id>
    <source>GO</source>
    <name>transport</name>
  </biological-process>
  <biological-process id="4ac83a51-48c8-4836-a652-bcc3ece98db8">
    <source-id>GO:0051726</source-id>
    <source>GO</source>
    <name>regulation of cell cycle</name>
  </biological-process>
  <biological-process id="ec491284-6c33-4d5e-8f65-d1aa651c0087">
    <source-id>GO:0006915</source-id>
    <source>GO</source>
    <name>apoptotic process</name>
  </biological-process>
  <biological-action id="3987241d-4f0b-4074-afa7-a9377e7c737e">
    <source-id>1</source-id>
    <source>WIKI</source>
    <name>increased</name>
  </biological-action>
  <biological-action id="5621dc5c-fcf9-493c-b447-1f6d001a2c66">
    <source-id>9</source-id>
    <source>WIKI</source>
    <name>disrupted</name>
  </biological-action>
  <stressor id="55a62b19-47a1-40d5-ae4d-b9fe42abcecb">
    <name>Triphenyl phosphate</name>
    <description></description>
    <chemicals>
      <chemical-initiator chemical-id="d7484a58-ef60-4a44-9382-1c8a2b781cd9" user-term="Triphenyl phosphate"/>
    </chemicals>
    <exposure-characterization></exposure-characterization>
    <creation-timestamp>2020-03-30T16:54:36</creation-timestamp>
    <last-modification-timestamp>2020-03-30T16:54:36</last-modification-timestamp>
  </stressor>
  <taxonomy id="199663bf-9cde-4f32-9747-92ff39291706">
    <source-id>WCS_8355</source-id>
    <source>common ecological species</source>
    <name>African clawed frog</name>
  </taxonomy>
  <taxonomy id="9ae1a5c4-d211-4b6b-add1-7a4eecc7f914">
    <source-id>9606</source-id>
    <source>NCBI</source>
    <name>Homo sapiens</name>
  </taxonomy>
  <taxonomy id="eeb2d2ed-22d4-4749-9b6b-714308b07a70">
    <source-id>10090</source-id>
    <source>NCBI</source>
    <name>Mus musculus</name>
  </taxonomy>
  <taxonomy id="b8efc1e9-39e1-4080-8d16-ead86bb29bc7">
    <source-id>10116</source-id>
    <source>NCBI</source>
    <name>Rattus norvegicus</name>
  </taxonomy>
  <taxonomy id="ce832485-f7d6-4a29-96e6-63023b92ecbf">
    <source-id>6239</source-id>
    <source>NCBI</source>
    <name>Caenorhabditis elegans</name>
  </taxonomy>
  <key-event id="51c75386-4e52-4f6e-beb0-b80eb9cc5f9e">
    <title>Increased, Hepatic thyroid hormone uptake/transport</title>
    <short-name>Increased, Hepatic thyroid hormone uptake/transport</short-name>
    <biological-organization-level>Tissue</biological-organization-level>
    <description></description>
    <measurement-methodology></measurement-methodology>
    <evidence-supporting-taxonomic-applicability></evidence-supporting-taxonomic-applicability>
    <cell-term>
      <source-id>CL:0000182</source-id>
      <source>CL</source>
      <name>hepatocyte</name>
    </cell-term>
    <applicability>
      <taxonomy taxonomy-id="199663bf-9cde-4f32-9747-92ff39291706">
        <evidence>Not Specified</evidence>
      </taxonomy>
    </applicability>
    <biological-events>
      <biological-event object-id="fd1332a3-5944-4d86-8087-11bbd87589a3" process-id="da60bd4b-41ae-4686-b5a4-989aba9c16a0" action-id="3987241d-4f0b-4074-afa7-a9377e7c737e"/>
    </biological-events>
    <references></references>
    <source>AOPWiki</source>
    <creation-timestamp>2016-11-29T18:41:30</creation-timestamp>
    <last-modification-timestamp>2017-09-16T10:17:31</last-modification-timestamp>
  </key-event>
  <key-event id="f84c5163-900f-4f60-847d-f4ab9c2f1da7">
    <title>Cell cycle, disrupted</title>
    <short-name>Cell cycle, disrupted</short-name>
    <biological-organization-level>Cellular</biological-organization-level>
    <description>&lt;p&gt;The disruption of the cell cycle leads to a decrease in cell number. The cell cycle consists of G&lt;sub&gt;1&lt;/sub&gt;, S, G&lt;sub&gt;2&lt;/sub&gt;, M, and G&lt;sub&gt;0&lt;/sub&gt; phases. The cell cycle regulation is disrupted by the cell cycle arrest in certain cell cycle phases. The histone gene expression is regulated in cell cycle phases [Heintz et al., 1983].&lt;/p&gt;
</description>
    <measurement-methodology>&lt;p&gt;The percentage of cells at G&lt;sub&gt;1&lt;/sub&gt;, G&lt;sub&gt;0&lt;/sub&gt;, S, and G&lt;sub&gt;2&lt;/sub&gt;/M phases can be detected by flow cytometry&amp;nbsp; [Li et al., 2013]. Cell cycle distribution was analyzed by fluorescence-activated cell sorter (FACS) analysis with a Partec PAS-II sorter [Zupkovitz et al., 2010]. The four cell-cycle phases in living cells can be measured with four-color fluorescent proteins using live-cell imaging [Bajar et al., 2016]. The incorporation of [&lt;sup&gt;3&lt;/sup&gt;H]deoxycytidine or [&lt;sup&gt;3&lt;/sup&gt;H]thymidine into cell DNA during the S phase can be monitored as DNA synthesis [Heintz et al., 1982].&lt;/p&gt;
</measurement-methodology>
    <evidence-supporting-taxonomic-applicability>&lt;p&gt;The histone gene expression alters in each phase of the cell cycle in human HeLa cells (&lt;em&gt;Homo sapiens&lt;/em&gt;) [Heintz et al., 1982].&lt;/p&gt;
</evidence-supporting-taxonomic-applicability>
    <organ-term>
      <source-id>UBERON:0000062</source-id>
      <source>UBERON</source>
      <name>organ</name>
    </organ-term>
    <cell-term>
      <source-id>CL:0000000</source-id>
      <source>CL</source>
      <name>cell</name>
    </cell-term>
    <applicability>
      <sex>
        <evidence>High</evidence>
        <sex>Unspecific</sex>
      </sex>
      <life-stage>
        <evidence>Moderate</evidence>
        <life-stage>Not Otherwise Specified</life-stage>
      </life-stage>
      <taxonomy taxonomy-id="9ae1a5c4-d211-4b6b-add1-7a4eecc7f914">
        <evidence>High</evidence>
      </taxonomy>
      <taxonomy taxonomy-id="eeb2d2ed-22d4-4749-9b6b-714308b07a70">
        <evidence>High</evidence>
      </taxonomy>
    </applicability>
    <biological-events>
      <biological-event object-id="0cc0807a-3176-4ffe-905b-5a674af7dc63" process-id="4ac83a51-48c8-4836-a652-bcc3ece98db8" action-id="5621dc5c-fcf9-493c-b447-1f6d001a2c66"/>
    </biological-events>
    <references>&lt;p&gt;Bajar, B.T. et al. (2016), &amp;quot;Fluorescent indicators for simultaneous reporting of all four cell cycle phases&amp;quot;, Nat Methods 13:993-996&amp;nbsp;&lt;/p&gt;

&lt;p&gt;Heintz, N. et al. (1983), &amp;quot;Regulation of human histone gene expression: Kinetics of accumulation and changes in the rate of synthesis and in the half-lives of individual histone mRNAs during the HeLa cell cycle&amp;quot;, Molecular and Cellular Biology 3:539-550&lt;/p&gt;

&lt;p&gt;Li, Q. et al. (2013), &amp;quot;Glyphosate and AMPA inhibit cancer cell growth through inhibiting intracellular glycine synthesis&amp;quot;, Drug Des Devel Ther 7:635-643&lt;/p&gt;
</references>
    <source>AOPWiki</source>
    <creation-timestamp>2018-01-21T20:59:13</creation-timestamp>
    <last-modification-timestamp>2021-06-30T02:56:39</last-modification-timestamp>
  </key-event>
  <key-event id="1e6d687c-18f7-4726-a507-538584b40a3d">
    <title>systemic inflammatory response syndrome</title>
    <short-name>SIRS</short-name>
    <biological-organization-level>Individual</biological-organization-level>
    <description></description>
    <measurement-methodology></measurement-methodology>
    <evidence-supporting-taxonomic-applicability></evidence-supporting-taxonomic-applicability>
    <applicability>
    </applicability>
    <references></references>
    <source>AOPWiki</source>
    <creation-timestamp>2021-03-19T09:50:36</creation-timestamp>
    <last-modification-timestamp>2021-03-19T09:50:36</last-modification-timestamp>
  </key-event>
  <key-event id="95a178df-00cb-42e6-a131-fc5a2b3c4f77">
    <title>Increase cell proliferation</title>
    <short-name>Increase cell proliferation</short-name>
    <biological-organization-level>Cellular</biological-organization-level>
    <description></description>
    <measurement-methodology></measurement-methodology>
    <evidence-supporting-taxonomic-applicability></evidence-supporting-taxonomic-applicability>
    <applicability>
    </applicability>
    <references></references>
    <source>AOPWiki</source>
    <creation-timestamp>2018-12-19T11:25:40</creation-timestamp>
    <last-modification-timestamp>2018-12-19T11:25:40</last-modification-timestamp>
  </key-event>
  <key-event id="ec2ef9b4-a81f-4d55-bbc0-56e7a279d433">
    <title>Apoptosis</title>
    <short-name>Apoptosis</short-name>
    <biological-organization-level>Cellular</biological-organization-level>
    <description>&lt;p&gt;Apoptosis, the process of programmed cell death, is characterized by distinct morphology with DNA fragmentation and energy dependency [Elmore, 2007]. Apoptosis, also called &amp;ldquo;physiological cell death&amp;rdquo;, is involved in cell turnover, physiological involution, and atrophy of various tissues and organs [Kerr et al., 1972]. The formation of apoptotic bodies involves marked condensation of both nucleus and cytoplasm, nuclear fragmentation, and separation of protuberances [Kerr et al., 1972]. Apoptosis is characterized by DNA ladder and chromatin condensation. Several stimuli such as hypoxia, nucleotides deprivation, chemotherapeutical drugs, DNA damage, and mitotic spindle damage induce p53 activation, leading to p21 activation and cell cycle arrest [Pucci et al., 2000]. The SAHA or TSA treatment on neonatal human dermal fibroblasts (NHDFs) for 24 or 72 hrs inhibited proliferation of the NHDF cells [Glaser et al., 2003]. Considering that the acetylation of histone H4 was increased by the treatment of SAHA for 4 hrs, histone deacetylase inhibition may be involved in the inhibition of the cell proliferation [Glaser et al., 2003]. The impaired proliferation was observed in HDAC1&lt;sup&gt;-/-&lt;/sup&gt; ES cells, which was rescued with the reintroduction of HDAC1 [Zupkovitz et al., 2010]. An&amp;nbsp;AOP focuses existes on&amp;nbsp;p21 pathway leading to apoptosis, however, alternative pathways such as NF-kappaB signaling pathways may be involved in the apoptosis of spermatocytes [Wang et al., 2017].&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Apoptosis is defined as a &lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;programmed cell death&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;. &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;&amp;nbsp;A decrease in apoptosis or a resistance to cell death is noted is described as a hallmark of cancer by Hanahan et al. It is widely admitted as an essential step in tumor proliferation (Adams, Lowe).&amp;nbsp;&amp;nbsp;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Apoptosis occurs after activation of a number of intrinsic and extrinsic signals which activate the protease caspase system which in turn activates the destruction of the cell.&amp;nbsp;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&amp;nbsp;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;em&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;&lt;span style="font-size:medium"&gt;&lt;span style="color:#000000"&gt;In mammals, the foetal ovary produces hundreds of thousands of oocytes. But most of them die before birth due to apoptosis (Kaur, S., &amp;amp; Kurokawa, M., 2023). The apoptotic process has a specific pattern at different stages: in foetal ovaries, the majority of apoptotic activity was found in germ cells, whereas in adult quiescent cortical follicles, apoptosis occurred from both granulosa and oocyte cells. The oocyte has been shown to be the one that triggers the apoptotic process and causes follicular atresia (Jin, X., et al. (2011). In humans, the primordial follicles&amp;#39; ovarian endowment is formed throughout foetal development. Apoptotic cell death, which is carried out with the assistance of multiple players and routes conserved from worms to humans, depletes this endowment by at least two-thirds prior to birth. As of right now, apoptosis has been linked to atresia, oocyte loss/selection, folliculogenesis, and oogenesis (Hussein MR, 2005)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/em&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;The Bcl-2 is a protein family suppressing apoptosis by &lt;span style="background-color:white"&gt;binding and inhibiting&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt; two proapoptotic proteins (Bax and Bak)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt; and transferring them to the mitochondrial outer membrane. In the absence of inhibition by Bcl2, Bax and Bak destroy the mitochondrial membrane and releases &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;proapoptotic signaling proteins, &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;such as&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt; cytochrome&amp;nbsp;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;em&gt;c&lt;/em&gt;&lt;em&gt; &lt;/em&gt;&lt;em&gt;&lt;span style="background-color:white"&gt;&lt;span style="color:black"&gt;which activated the caspase system. &lt;/span&gt;&lt;/span&gt;&lt;/em&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;An increased&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt; expression of &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;these &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;antiapoptotic &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;proteins&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt; (Bcl-2, Bcl-x&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;sub&gt;L&lt;/sub&gt;) &lt;em&gt;&lt;span style="background-color:white"&gt;&lt;span style="color:black"&gt;occurs in cancer (Hanahan, Adams, Lowe). Several others pathways such as the l&lt;/span&gt;&lt;/span&gt;&lt;/em&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;oss of TP53 tumor suppressor function,&lt;/span&gt;&lt;/span&gt;&lt;/span&gt; or &lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;the increase &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;of survival signals (Igf1/2), &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;or decrease of&lt;/span&gt;&lt;/span&gt;&lt;/span&gt; &lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;proapoptotic factors (Bax, Bim, Puma)&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt; can also increase tumor growth &lt;em&gt;(Hanahan, Juntilla).&lt;/em&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;In breast cancer a decrease in apoptosis and a resistance to cell death has been described thoroughly, especially using a dysregulation of the Bcl2 system or TP53 (Parton, &lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Williams&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;, &lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Shahbandi&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;).&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
</description>
    <measurement-methodology>&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Apoptosis is characterized by many morphological and biochemical changes&amp;nbsp;&lt;span style="color:black"&gt;such as homogenous condensation of chromatin to one side or the periphery of the nuclei, membrane blebbing and formation of apoptotic bodies with fragmented nuclei, DNA fragmentation, enzymatic activation of pro-caspases, or phosphatidylserine translocation that can be measured using electron and cytochemical optical microscopy, proteomic and genomic methods, and spectroscopic techniques [Archana et al., 2013; Martinez et al., 2010;&amp;nbsp;Taatjes et al., 2008; Yasuhara et al., 2003].&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;・&lt;span style="color:black"&gt;DNA fragmentation can be quantified with comet assay using electrophoresis, where the tail length, head size, tail intensity, and head intensity of the comet are measured [Yasuhara et al., 2003].&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;・The apoptosis is detected with the expression alteration of procaspases 7 and 3 by Western blotting using antibodies [Parajuli&lt;span style="color:black"&gt;&amp;nbsp;et al.&lt;/span&gt;, 2014].&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;・The apoptosis is measured with down-regulation of anti-apoptotic gene baculoviral inhibitor of apoptosis protein repeat containing 2 (BIRC2, or cIAP1) [Parajuli&lt;span style="color:black"&gt;&amp;nbsp;et al.&lt;/span&gt;, 2014].&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;・Apoptotic nucleosomes are detected using Cell Death Detection ELISA kit, which was calculated as absorbance subtraction at 405 nm and 490 nm [Parajuli&lt;span style="color:black"&gt;&amp;nbsp;et al.&lt;/span&gt;, 2014].&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;・Cleavage of PARP is detected with Western blotting [Parajuli&lt;span style="color:black"&gt;&amp;nbsp;et al.&lt;/span&gt;, 2014].&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;・Caspase-3 and caspase-9 activity is measured with the enzyme-catalyzed release of p-nitroanilide (pNA) and quantified at 405 nm [Wu&lt;span style="color:black"&gt;&amp;nbsp;et al.&lt;/span&gt;, 2016].&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;・Apoptosis is measured with Annexin V-FITC probes, and the relative percentage of Annexin V-FITC-positive/PI-negative cells is analyzed by flow cytometry [Wu et al., 2016].&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;・Apoptosis is detected with the Terminal dUTP Nick End-Labeling (TUNEL) method to assay the endonuclease cleavage products by enzymatically end-labeling the DNA strand breaks [Kressel and Groscurth, 1994].&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;・For the detection of apoptosis, the testes are fixed in neutral buffered formalin and embedded in paraffin. Germ cell death is visualized in testis sections by Terminal dUTP Nick End-Labeling (TUNEL) staining method [Wade et al., 2008]. The incidence of TUNEL-positive cells is expressed as the number of positive cells per tubule examined for one entire testis section per animal [Wade et al., 2008]&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
</measurement-methodology>
    <evidence-supporting-taxonomic-applicability>&lt;p&gt;・Apoptosis is induced in human prostate cancer cell lines (&lt;em&gt;Homo sapiens&lt;/em&gt;) [Parajuli et al., 2014].&lt;/p&gt;

&lt;p&gt;・Apoptosis occurs in B6C3F1 mouse (&lt;em&gt;Mus musculus&lt;/em&gt;) [Elmore, 2007].&lt;/p&gt;

&lt;p&gt;・Apoptosis occurs in Sprague-Dawley rat (&lt;em&gt;Rattus norvegicus&lt;/em&gt;) [Elmore, 2007].&lt;/p&gt;

&lt;p&gt;・Apoptosis occurs in the nematode (&lt;em&gt;Caenorhabditis elegans&lt;/em&gt;) [Elmore, 2007].&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;Apoptosis occurs in breast cancer cells, human and mouse (Parton)&lt;/li&gt;
	&lt;li style="text-align:justify"&gt;&lt;em&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;&lt;span style="font-size:12pt"&gt;Apoptosis applicable to fishes, hence be used to study as models (dos Santos, N. M., et al. (2008).&lt;/span&gt;&lt;/span&gt;&lt;/em&gt;&lt;/li&gt;
	&lt;li style="text-align:justify"&gt;&lt;em&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;&lt;span style="font-size:12pt"&gt;Apoptosis in humans and baboon ovaries (Kugu, K., et al. (1998)&lt;/span&gt;&lt;/span&gt;&lt;/em&gt;&lt;/li&gt;
	&lt;li style="text-align:justify"&gt;&lt;em&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;&lt;span style="font-size:12pt"&gt;Apoptosis in amphibians during metamorphosis (Ishizuya-Oka, A., et al. (2010).&lt;/span&gt;&lt;/span&gt;&lt;/em&gt;&lt;/li&gt;
	&lt;li style="text-align:justify"&gt;&lt;em&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;&lt;span style="font-size:12pt"&gt;Apoptosis in Drosophila melanogaster (Steller, H. (2008)&lt;/span&gt;&lt;/span&gt;&lt;/em&gt;&lt;/li&gt;
	&lt;li style="text-align:justify"&gt;&lt;em&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Apoptosis is a highly conserved and essential process across a broad taxonomic range, from unicellular eukaryotes to complex multicellular animals, it is also evident in metazoans (Suraweera, C. D., et al. (2022).&lt;/span&gt;&lt;/em&gt;&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;&lt;em&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Sex Applicability:&lt;br /&gt;
	Both sexes. Apoptosis occurs in male and female systems (e.g., oocyte and sperm cell turnover).&lt;/span&gt;&lt;/em&gt;&lt;/p&gt;
	&lt;/li&gt;
	&lt;li&gt;
	&lt;p&gt;&lt;em&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Life Stage Applicability:&lt;br /&gt;
	All stages. Especially critical during embryonic development and in maintaining adult tissue homeostasis.&lt;/span&gt;&lt;/em&gt;&lt;/p&gt;
	&lt;/li&gt;
&lt;/ul&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;
</evidence-supporting-taxonomic-applicability>
    <organ-term>
      <source-id>UBERON:0000062</source-id>
      <source>UBERON</source>
      <name>organ</name>
    </organ-term>
    <cell-term>
      <source-id>CL:0000000</source-id>
      <source>CL</source>
      <name>cell</name>
    </cell-term>
    <applicability>
      <sex>
        <evidence>High</evidence>
        <sex>Unspecific</sex>
      </sex>
      <life-stage>
        <evidence>High</evidence>
        <life-stage>Not Otherwise Specified</life-stage>
      </life-stage>
      <taxonomy taxonomy-id="9ae1a5c4-d211-4b6b-add1-7a4eecc7f914">
        <evidence>High</evidence>
      </taxonomy>
      <taxonomy taxonomy-id="eeb2d2ed-22d4-4749-9b6b-714308b07a70">
        <evidence>High</evidence>
      </taxonomy>
      <taxonomy taxonomy-id="b8efc1e9-39e1-4080-8d16-ead86bb29bc7">
        <evidence>High</evidence>
      </taxonomy>
      <taxonomy taxonomy-id="ce832485-f7d6-4a29-96e6-63023b92ecbf">
        <evidence>High</evidence>
      </taxonomy>
    </applicability>
    <biological-events>
      <biological-event process-id="ec491284-6c33-4d5e-8f65-d1aa651c0087" action-id="3987241d-4f0b-4074-afa7-a9377e7c737e"/>
    </biological-events>
    <references>&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Archana, M. et al. (2013), &amp;quot;Various methods available for detection of apoptotic cells&amp;quot;, Indian J Cancer 50:274-283&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Elmore, S. (2007), &amp;quot;Apoptosis: a review of programmed cell death&amp;quot;, Toxicol Pathol 35:495-516&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Glaser, K.B. et al. (2003), &amp;quot;Gene expression profiling of multiple histone deacetylase (HDAC) inhibitors: defining a common gene set produced by HDAC inhibition in T24 and MDA carcinoma cell lines&amp;quot;, Mol Cancer Ther 2:151-163&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Kerr, J.F.R. et al. (1972), &amp;quot;Apoptosis: a basic biological phenomenon with wide-ranging implications in tissue kinetics&amp;quot;, Br J Cancer 26:239-257&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Kressel, M. and Groscurth, P. (1994), &amp;quot;Distinction of apoptotic and necrotic cell death by in situ labelling of fragmented DNA&amp;quot;, Cell Tissue Res 278:549-556&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Martinez, M.M. et al. (2010), &amp;quot;Detection of apoptosis: A review of conventioinal and novel techniques&amp;quot;, Anal Methods 2:996-1004&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Parajuli, K.R. et al. (2014), &amp;quot;Methoxyacetic acid suppresses prostate cancer cell growth by inducing growth arrest and apoptosis&amp;quot;, Am J Clin Exp Urol 2:300-313&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Pucci, B. et al. (2000), &amp;quot;Cell cycle and apoptosis&amp;quot;, Neoplasia 2:291-299&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Taatjes, D.J. et al. (2008), &amp;quot;Morphological and cytochemical determination of cell death by apoptosis&amp;quot;, Histochem Cell Biol 129:33-43&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Wade, M.G. et al. (2008), &amp;quot;Methoxyacetic acid-induced spermatocyte death is associated with histone hyperacetylation in rats&amp;quot;, Biol Reprod 78:822-831&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Wang, C. et al. (2017), &amp;quot;CD147 regulates extrinsic apoptosis in spermatocytes by modulating NFkB signaling pathways&amp;quot;, Oncotarget 8:3132-3143&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Wu, R. et al. (2016), &amp;quot;microRNA-497 induces apoptosis and suppressed proliferation via the Bcl-2/Bax-caspase9-caspase 3 pathway and cyclin D2 protein in HUVECs&amp;quot;, PLoS One 11:e0167052&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;&lt;span style="color:black"&gt;Yasuhara, S. et al. (2003), &lt;/span&gt;&amp;quot;&lt;span style="color:black"&gt;Comparison of comet assay, electron microscopy, and flow cytometry for detection of apoptosis&lt;/span&gt;&amp;quot;&lt;span style="color:black"&gt;, J Histochem Cytochem 51:873-885&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&lt;span style="font-size:16px"&gt;&lt;span style="font-family:Arial,Helvetica,sans-serif"&gt;Zupkovitz, G. et al. (2010), &amp;quot;The cyclin-dependent kinase inhibitor p21 is a crucial target for histone deacetylase 1 as a regulator of cellular proliferation&amp;quot;, Mol Cell Biol 30:1171-1181&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Hanahan D, Weinberg RA. Hallmarks of cancer: the next generation. Cell. 2011 Mar 4;144(5):646-74. doi: 10.1016/j.cell.2011.02.013. PMID: 21376230&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Adams JM, Cory S. The Bcl-2 apoptotic switch in cancer development and therapy. Oncogene. 2007 Feb 26;26(9):1324-37. doi: 10.1038/sj.onc.1210220. PMID: 17322918; PMCID: PMC2930981.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Lowe, S., Cepero, E. &amp;amp; Evan, G. Intrinsic tumour suppression.&amp;nbsp;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;em&gt;Nature&lt;/em&gt;&amp;nbsp;&lt;strong&gt;432&lt;/strong&gt;, 307&amp;ndash;315 (2004). &lt;a href="https://doi.org/10.1038/nature03098" style="color:#467886; text-decoration:underline"&gt;&lt;span style="color:black"&gt;https://doi.org/10.1038/nature03098&lt;/span&gt;&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Parton M, Dowsett M, Smith I. Studies of apoptosis in breast cancer. BMJ. 2001 Jun 23;322(7301):1528-32. doi: 10.1136/bmj.322.7301.1528. PMID: 11420276; PMCID: PMC1120573.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Junttila MR, Evan GI. p53--a Jack of all trades but master of none. Nat Rev Cancer. 2009 Nov;9(11):821-9. doi: 10.1038/nrc2728. Epub 2009 Sep 24. PMID: 19776747.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Williams MM, Cook RS. Bcl-2 family proteins in breast development and cancer: could Mcl-1 targeting overcome therapeutic resistance? Oncotarget. 2015 Feb 28;6(6):3519-30. doi: 10.18632/oncotarget.2792. PMID: 25784482; PMCID: PMC4414133.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Shahbandi A, Nguyen HD, Jackson JG. TP53 Mutations and Outcomes in Breast Cancer: Reading beyond the Headlines. Trends Cancer. 2020 Feb;6(2):98-110. doi: 10.1016/j.trecan.2020.01.007. Epub 2020 Feb 5. PMID: 32061310; PMCID: PMC7931175.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Hanahan D, Weinberg RA. Hallmarks of cancer: the next generation. Cell. 2011 Mar 4;144(5):646-74. doi: 10.1016/j.cell.2011.02.013. PMID: 21376230&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Adams JM, Cory S. The Bcl-2 apoptotic switch in cancer development and therapy. Oncogene. 2007 Feb 26;26(9):1324-37. doi: 10.1038/sj.onc.1210220. PMID: 17322918; PMCID: PMC2930981.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Lowe, S., Cepero, E. &amp;amp; Evan, G. Intrinsic tumour suppression.&amp;nbsp;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;em&gt;Nature&lt;/em&gt;&amp;nbsp;&lt;strong&gt;432&lt;/strong&gt;, 307&amp;ndash;315 (2004). &lt;a href="https://doi.org/10.1038/nature03098" style="color:#467886; text-decoration:underline"&gt;&lt;span style="color:black"&gt;https://doi.org/10.1038/nature03098&lt;/span&gt;&lt;/a&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Parton M, Dowsett M, Smith I. Studies of apoptosis in breast cancer. BMJ. 2001 Jun 23;322(7301):1528-32. doi: 10.1136/bmj.322.7301.1528. PMID: 11420276; PMCID: PMC1120573.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Junttila MR, Evan GI. p53--a Jack of all trades but master of none. Nat Rev Cancer. 2009 Nov;9(11):821-9. doi: 10.1038/nrc2728. Epub 2009 Sep 24. PMID: 19776747.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Williams MM, Cook RS. Bcl-2 family proteins in breast development and cancer: could Mcl-1 targeting overcome therapeutic resistance? Oncotarget. 2015 Feb 28;6(6):3519-30. doi: 10.18632/oncotarget.2792. PMID: 25784482; PMCID: PMC4414133.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Aptos,sans-serif"&gt;&lt;span style="background-color:white"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;&lt;span style="color:black"&gt;Shahbandi A, Nguyen HD, Jackson JG. TP53 Mutations and Outcomes in Breast Cancer: Reading beyond the Headlines. Trends Cancer. 2020 Feb;6(2):98-110. doi: 10.1016/j.trecan.2020.01.007. Epub 2020 Feb 5. PMID: 32061310; PMCID: PMC7931175.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;

&lt;p style="text-align:justify"&gt;&amp;nbsp;&lt;/p&gt;

&lt;p&gt;Parton M, Dowsett M, Smith I. Studies of apoptosis in breast cancer. BMJ. 2001 Jun 23;322(7301):1528-32. doi: 10.1136/bmj.322.7301.1528. PMID: 11420276; PMCID: PMC1120573.&lt;/p&gt;

&lt;p&gt;&amp;nbsp;&lt;/p&gt;

&lt;ul&gt;
	&lt;li&gt;&lt;em&gt;&lt;span style="font-family:Tahoma,Geneva,sans-serif"&gt;Kaur S, Kurokawa M. Regulation of Oocyte Apoptosis: A View from Gene Knockout Mice. Int J Mol Sci. 2023;24(2).&lt;/span&gt;&lt;/em&gt;&lt;/li&gt;
	&lt;li&gt;&lt;em&gt;&lt;span style="font-family:Tahoma,Geneva,sans-serif"&gt;Jin X, Xiao LJ, Zhang XS, Liu YX. Apotosis in ovary. Front Biosci (Schol Ed). 2011;3(2):680-97.&lt;/span&gt;&lt;/em&gt;&lt;/li&gt;
	&lt;li&gt;&lt;em&gt;&lt;span style="font-family:Tahoma,Geneva,sans-serif"&gt;Hussein MR. Apoptosis in the ovary: molecular mechanisms. Hum Reprod Update. 2005;11(2):162-77.&lt;/span&gt;&lt;/em&gt;&lt;/li&gt;
	&lt;li&gt;&lt;em&gt;&lt;span style="font-family:Tahoma,Geneva,sans-serif"&gt;dos Santos NM, do Vale A, Reis MI, Silva MT. Fish and apoptosis: molecules and pathways. Curr Pharm Des. 2008;14(2):148-69.&lt;/span&gt;&lt;/em&gt;&lt;/li&gt;
	&lt;li&gt;&lt;em&gt;&lt;span style="font-family:Tahoma,Geneva,sans-serif"&gt;Kugu K, Ratts VS, Piquette GN, Tilly KI, Tao XJ, Martimbeau S, et al. Analysis of apoptosis and expression of bcl-2 gene family members in the human and baboon ovary. Cell Death Differ. 1998;5(1):67-76.&lt;/span&gt;&lt;/em&gt;&lt;/li&gt;
	&lt;li&gt;&lt;em&gt;&lt;span style="font-family:Tahoma,Geneva,sans-serif"&gt;Ishizuya-Oka A, Hasebe T, Shi YB. Apoptosis in amphibian organs during metamorphosis. Apoptosis. 2010;15(3):350-64.&lt;/span&gt;&lt;/em&gt;&lt;/li&gt;
	&lt;li&gt;&lt;em&gt;&lt;span style="font-family:Tahoma,Geneva,sans-serif"&gt;Steller H. Regulation of apoptosis in Drosophila. Cell Death &amp;amp; Differentiation. 2008;15(7):1132-8.&lt;/span&gt;&lt;/em&gt;&lt;/li&gt;
	&lt;li&gt;&lt;em&gt;&lt;span style="font-family:Tahoma,Geneva,sans-serif"&gt;Suraweera CD, Banjara S, Hinds MG, Kvansakul M. Metazoans and Intrinsic Apoptosis: An Evolutionary Analysis of the Bcl-2 Family. International Journal of Molecular Sciences. 2022;23(7):3691.&lt;/span&gt;&lt;/em&gt;&lt;/li&gt;
&lt;/ul&gt;
</references>
    <source>AOPWiki</source>
    <creation-timestamp>2017-02-07T13:21:50</creation-timestamp>
    <last-modification-timestamp>2025-05-31T08:50:09</last-modification-timestamp>
  </key-event>
  <key-event id="1d4e81d1-136b-40c2-933d-30d1c2e40533">
    <title>Altered, Thyroid hormone-dependent gene expression</title>
    <short-name>Altered, TH-dependent gene expression</short-name>
    <biological-organization-level>Molecular</biological-organization-level>
    <description></description>
    <measurement-methodology></measurement-methodology>
    <evidence-supporting-taxonomic-applicability></evidence-supporting-taxonomic-applicability>
    <applicability>
      <taxonomy taxonomy-id="199663bf-9cde-4f32-9747-92ff39291706">
        <evidence>Not Specified</evidence>
      </taxonomy>
    </applicability>
    <references></references>
    <source>AOPWiki</source>
    <creation-timestamp>2020-12-09T14:22:38</creation-timestamp>
    <last-modification-timestamp>2020-12-09T14:22:38</last-modification-timestamp>
  </key-event>
  <aop id="0643ebb7-9db8-4beb-8eb9-d13c5bde318e">
    <title>AOP for thyroid disorder caused by triphenyl phosphate via TRβ activation</title>
    <short-name>Thyroid hormone effect</short-name>
    <point-of-contact>Fei Li</point-of-contact>
    <authors>&lt;p style="text-align:left"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Times,serif"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;Xiaoqing Wang, Fei Li&lt;sup&gt;*&lt;/sup&gt;, Jingwen Chen, Chenglong Ji, Huifeng Wu&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
&lt;quillbot-extension-portal&gt;&lt;/quillbot-extension-portal&gt;</authors>
    <coaches>
    </coaches>
    <external_links>
    </external_links>
    <status>
      <wiki-license>BY-SA</wiki-license>
    </status>
    <oecd-project/>
    <handbook-version>2.0</handbook-version>
    <abstract>&lt;p&gt;&lt;span style="font-size:12.0pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;The critical molecular initiating event (MIE) was the configuration changes of C-terminal helix 12 (H12) of thyroid hormone receptor &amp;beta; (TR&amp;beta;) induced by triphenyl phosphate (TPP) binding. The transcriptomic analysis extended the related key event (KE1) &lt;/span&gt;&lt;/span&gt;&lt;span style="font-size:12.0pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;at the subcellular level, such as changes in gene expression levels for coding cycle regulation&lt;em&gt; &lt;/em&gt;(&lt;em&gt;CCND1&lt;/em&gt;), inflammatory response&lt;em&gt; &lt;/em&gt;(&lt;em&gt;IL1A and IL6&lt;/em&gt;), and cell proliferation and apoptosis&lt;em&gt; &lt;/em&gt;(&lt;em&gt;BAD&lt;/em&gt;,&lt;em&gt; TP53&lt;/em&gt; and &lt;em&gt;CASP9&lt;/em&gt;). Then, the KE2 at cellular levels such as apoptosis, cell cycle control, and cell proliferation were influenced accordingly. As a result, these alterations led to thyroid disorder as adverse outcomes.&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
&lt;quillbot-extension-portal&gt;&lt;/quillbot-extension-portal&gt;</abstract>
    <background>&lt;p style="text-align:justify"&gt;&lt;span style="font-size:12pt"&gt;&lt;span style="font-family:Times,serif"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;A large number of studies reported that triphenyl phosphate (TPP) was detected from environmental and human samples, indicating potential environmental and health risks&lt;/span&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;. Previous toxicology researches suggested that TPP was a potential endocrine disruptor&lt;/span&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;, which was &lt;/span&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;harmful to thyroid function &lt;/span&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;. However, &lt;/span&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;t&lt;/span&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;he potential thyroid hormone-disrupting effects of TPP were scarce and the mechanism remained unclear&lt;/span&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;. Additional studies are required to further explore the toxicity pathway of thyroid dysfunction exposed by TPP.&lt;/span&gt;&lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
&lt;quillbot-extension-portal&gt;&lt;/quillbot-extension-portal&gt;</background>
    <development-strategy>&lt;p&gt;&lt;span style="font-size:12.0pt"&gt;&lt;span style="font-family:&amp;quot;Times New Roman&amp;quot;,serif"&gt;This study retrieved the data from comparative toxicogenomics database (CTD) and screened out the core gene. Molecular dynamics (MD) analysis was used to explore configuration changes and confirm molecular initiating event (MIE). The transcriptomic analysis was further utilized to supplement the relationships between MIEs and key events (KEs) of AOP. &lt;/span&gt;&lt;/span&gt;&lt;/p&gt;
&lt;quillbot-extension-portal&gt;&lt;/quillbot-extension-portal&gt;</development-strategy>
    <molecular-initiating-event key-event-id="51c75386-4e52-4f6e-beb0-b80eb9cc5f9e">
      <evidence-supporting-chemical-initiation></evidence-supporting-chemical-initiation>
    </molecular-initiating-event>
    <key-events>
      <key-event key-event-id="f84c5163-900f-4f60-847d-f4ab9c2f1da7"/>
      <key-event key-event-id="1d4e81d1-136b-40c2-933d-30d1c2e40533"/>
      <key-event key-event-id="1e6d687c-18f7-4726-a507-538584b40a3d"/>
      <key-event key-event-id="95a178df-00cb-42e6-a131-fc5a2b3c4f77"/>
      <key-event key-event-id="ec2ef9b4-a81f-4d55-bbc0-56e7a279d433"/>
    </key-events>
    <applicability>
    </applicability>
    <overall-assessment>
      <description>&lt;p&gt;&amp;nbsp;&lt;/p&gt;
&lt;quillbot-extension-portal&gt;&lt;/quillbot-extension-portal&gt;</description>
      <applicability>&lt;p&gt;&amp;nbsp;&lt;/p&gt;
&lt;quillbot-extension-portal&gt;&lt;/quillbot-extension-portal&gt;</applicability>
      <key-event-essentiality-summary>&lt;p&gt;&amp;nbsp;&lt;/p&gt;
&lt;quillbot-extension-portal&gt;&lt;/quillbot-extension-portal&gt;</key-event-essentiality-summary>
      <weight-of-evidence-summary>&lt;p&gt;&amp;nbsp;&lt;/p&gt;
&lt;quillbot-extension-portal&gt;&lt;/quillbot-extension-portal&gt;</weight-of-evidence-summary>
      <known-modulating-factors>&lt;div&gt;
&lt;table class="table table-bordered table-fullwidth"&gt;
	&lt;thead&gt;
		&lt;tr&gt;
			&lt;th&gt;Modulating Factor (MF)&lt;/th&gt;
			&lt;th&gt;Influence or Outcome&lt;/th&gt;
			&lt;th&gt;KER(s) involved&lt;/th&gt;
		&lt;/tr&gt;
	&lt;/thead&gt;
	&lt;tbody&gt;
		&lt;tr&gt;
			&lt;td&gt;&amp;nbsp;&lt;/td&gt;
			&lt;td&gt;&amp;nbsp;&lt;/td&gt;
			&lt;td&gt;&amp;nbsp;&lt;/td&gt;
		&lt;/tr&gt;
	&lt;/tbody&gt;
&lt;/table&gt;
&lt;/div&gt;
&lt;quillbot-extension-portal&gt;&lt;/quillbot-extension-portal&gt;</known-modulating-factors>
      <quantitative-considerations>&lt;p&gt;&amp;nbsp;&lt;/p&gt;
&lt;quillbot-extension-portal&gt;&lt;/quillbot-extension-portal&gt;</quantitative-considerations>
    </overall-assessment>
    <potential-applications>&lt;p&gt;&amp;nbsp;&lt;/p&gt;
&lt;quillbot-extension-portal&gt;&lt;/quillbot-extension-portal&gt;</potential-applications>
    <aop-stressors>
      <aop-stressor stressor-id="55a62b19-47a1-40d5-ae4d-b9fe42abcecb">
        <evidence>Not Specified</evidence>
      </aop-stressor>
    </aop-stressors>
    <references>&lt;p&gt;&amp;nbsp;&lt;/p&gt;
&lt;quillbot-extension-portal&gt;&lt;/quillbot-extension-portal&gt;</references>
    <source>AOPWiki</source>
    <creation-timestamp>2021-04-21T21:08:37</creation-timestamp>
    <last-modification-timestamp>2023-05-26T03:22:45</last-modification-timestamp>
  </aop>
  <vendor-specific id="dc61117b-021b-4eb5-af49-91188d95eee3" name="AopWiki" version="2026-04-18 20:14:19 +0000">
    <biological-process-reference id="da60bd4b-41ae-4686-b5a4-989aba9c16a0" aop-wiki-id="14461"/>
    <biological-process-reference id="4ac83a51-48c8-4836-a652-bcc3ece98db8" aop-wiki-id="19749"/>
    <biological-process-reference id="ec491284-6c33-4d5e-8f65-d1aa651c0087" aop-wiki-id="7931"/>
    <biological-action-reference id="3987241d-4f0b-4074-afa7-a9377e7c737e" aop-wiki-id="1"/>
    <biological-action-reference id="5621dc5c-fcf9-493c-b447-1f6d001a2c66" aop-wiki-id="7"/>
    <taxonomy-reference id="199663bf-9cde-4f32-9747-92ff39291706" aop-wiki-id="465"/>
    <taxonomy-reference id="9ae1a5c4-d211-4b6b-add1-7a4eecc7f914" aop-wiki-id="1"/>
    <taxonomy-reference id="eeb2d2ed-22d4-4749-9b6b-714308b07a70" aop-wiki-id="30"/>
    <taxonomy-reference id="b8efc1e9-39e1-4080-8d16-ead86bb29bc7" aop-wiki-id="66"/>
    <taxonomy-reference id="ce832485-f7d6-4a29-96e6-63023b92ecbf" aop-wiki-id="3856"/>
    <chemical-reference id="d7484a58-ef60-4a44-9382-1c8a2b781cd9" aop-wiki-id="21952"/>
    <stressor-reference id="55a62b19-47a1-40d5-ae4d-b9fe42abcecb" aop-wiki-id="548"/>
    <biological-object-reference id="fd1332a3-5944-4d86-8087-11bbd87589a3" aop-wiki-id="59279"/>
    <biological-object-reference id="0cc0807a-3176-4ffe-905b-5a674af7dc63" aop-wiki-id="140170"/>
    <key-event-reference id="51c75386-4e52-4f6e-beb0-b80eb9cc5f9e" aop-wiki-id="1158"/>
    <key-event-reference id="f84c5163-900f-4f60-847d-f4ab9c2f1da7" aop-wiki-id="1505"/>
    <key-event-reference id="1e6d687c-18f7-4726-a507-538584b40a3d" aop-wiki-id="1844"/>
    <key-event-reference id="95a178df-00cb-42e6-a131-fc5a2b3c4f77" aop-wiki-id="1555"/>
    <key-event-reference id="ec2ef9b4-a81f-4d55-bbc0-56e7a279d433" aop-wiki-id="1262"/>
    <key-event-reference id="1d4e81d1-136b-40c2-933d-30d1c2e40533" aop-wiki-id="1829"/>
    <aop-reference id="0643ebb7-9db8-4beb-8eb9-d13c5bde318e" aop-wiki-id="393"/>
  </vendor-specific>
</data>
