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Relationship: 2310

Title

A descriptive phrase which clearly defines the two KEs being considered and the sequential relationship between them (i.e., which is upstream, and which is downstream). More help

SARS-CoV-2 cell entry leads to SARS-CoV-2 production

Upstream event
The causing Key Event (KE) in a Key Event Relationship (KER). More help
Downstream event
The responding Key Event (KE) in a Key Event Relationship (KER). More help

Key Event Relationship Overview

The utility of AOPs for regulatory application is defined, to a large extent, by the confidence and precision with which they facilitate extrapolation of data measured at low levels of biological organisation to predicted outcomes at higher levels of organisation and the extent to which they can link biological effect measurements to their specific causes.Within the AOP framework, the predictive relationships that facilitate extrapolation are represented by the KERs. Consequently, the overall WoE for an AOP is a reflection in part, of the level of confidence in the underlying series of KERs it encompasses. Therefore, describing the KERs in an AOP involves assembling and organising the types of information and evidence that defines the scientific basis for inferring the probable change in, or state of, a downstream KE from the known or measured state of an upstream KE. More help

AOPs Referencing Relationship

AOP Name Adjacency Weight of Evidence Quantitative Understanding Point of Contact Author Status OECD Status
SARS-CoV-2 infection leading to hyperinflammation adjacent Hasmik Yepiskoposyan (send email) Under development: Not open for comment. Do not cite
SARS-CoV-2 infection of olfactory epithelium leading to impaired olfactory function (short-term anosmia) adjacent Sandra Coecke (send email) Under development: Not open for comment. Do not cite Under Development

Taxonomic Applicability

Latin or common names of a species or broader taxonomic grouping (e.g., class, order, family) that help to define the biological applicability domain of the KER.In general, this will be dictated by the more restrictive of the two KEs being linked together by the KER.  More help

Sex Applicability

An indication of the the relevant sex for this KER. More help

Life Stage Applicability

An indication of the the relevant life stage(s) for this KER.  More help

Key Event Relationship Description

Provides a concise overview of the information given below as well as addressing details that aren’t inherent in the description of the KEs themselves. More help

Evidence Collection Strategy

Include a description of the approach for identification and assembly of the evidence base for the KER. For evidence identification, include, for example, a description of the sources and dates of information consulted including expert knowledge, databases searched and associated search terms/strings.  Include also a description of study screening criteria and methodology, study quality assessment considerations, the data extraction strategy and links to any repositories/databases of relevant references.Tabular summaries and links to relevant supporting documentation are encouraged, wherever possible. More help

Evidence Supporting this KER

Addresses the scientific evidence supporting KERs in an AOP setting the stage for overall assessment of the AOP. More help
Biological Plausibility
Addresses the biological rationale for a connection between KEupstream and KEdownstream.  This field can also incorporate additional mechanistic details that help inform the relationship between KEs, this is useful when it is not practical/pragmatic to represent these details as separate KEs due to the difficulty or relative infrequency with which it is likely to be measured.   More help
Uncertainties and Inconsistencies
Addresses inconsistencies or uncertainties in the relationship including the identification of experimental details that may explain apparent deviations from the expected patterns of concordance. More help

Known modulating factors

This table captures specific information on the MF, its properties, how it affects the KER and respective references.1.) What is the modulating factor? Name the factor for which solid evidence exists that it influences this KER. Examples: age, sex, genotype, diet 2.) Details of this modulating factor. Specify which features of this MF are relevant for this KER. Examples: a specific age range or a specific biological age (defined by...); a specific gene mutation or variant, a specific nutrient (deficit or surplus); a sex-specific homone; a certain threshold value (e.g. serum levels of a chemical above...) 3.) Description of how this modulating factor affects this KER. Describe the provable modification of the KER (also quantitatively, if known). Examples: increase or decrease of the magnitude of effect (by a factor of...); change of the time-course of the effect (onset delay by...); alteration of the probability of the effect; increase or decrease of the sensitivity of the downstream effect (by a factor of...) 4.) Provision of supporting scientific evidence for an effect of this MF on this KER. Give a list of references.  More help
Modulating Factor (MF) MF Specification Effect(s) on the KER Reference(s)

Sex

female sex (XX chromosomes)

ACE2 localizes to the X sex chromosome and displays a sex-dependent expression profile with higher expression in female than in male tissues [1,2]. Estradiol inhibits TMPRSS2, needed to facilitate SARS-CoV-2 entry into the cell [3]. Estrogen therapy has been shown to mitigate endoplasmic reticulum stress induced by SARS-CoV-2 invasion through activation of cellular unfold protein response and regulation of inositol triphosphate (IP3) and phospholipase C [4]. Different studies have also illustrated that estradiol increases the expression of ADAM17, leading to high-circulating soluble ACE2 potentially neutralizing SARS-CoV-2 and preventing its binding to mACE2 [5]. Thus, estradiol might reduce SARS-CoV-2 infectivity through modulation of cellular ACE2/TMPRSS2/ADAM17 axis expression.

1. doi: 10.1177/1933719115597760

2. doi: 10.1016/j.mce.2015.11.004

3) doi: 10.1007/s11033-021-06390-1

4) doi: 10.1016/j.mehy.2020.110148

5) doi: 10.2217/pgs-2020-0092

Male sex (XY chromosomes) Androgen receptors (ARs) play a key role in increasing transcription of TMPRSS2. This may explain the predominance of males to COVID-19 fatality and severity. [6]

6) doi: 10.1073/pnas.2021450118

Age Old people ACE2 protein expression is increased with aging in several tissues [1], including lungs and particularly in patients requiring mechanical ventilation [2]. During aging, telomere dysfunction activates a DNA damage response leading to higher ACE2 expression. Thus, telomere shortening could contribute to make elderly more susceptible to SARS-CoV-2 infection [3].

1. 10.1016/j.exger.2021.111507

2. 10.1371/journal.pone.0247060

3. 10.15252/embr.202153658

Vitamin D

(high evidence)

Vitamin D deficiency

Vitamin D administration enhanced mRNA expression of VDR and ACE2 in a rat model of acute lung injury [1]. In particular, vitamin D upregulates the sACE2 form [2]. Thus, low vitamin D status may impair the trapping protective mechanism of sACE2 [3]. Furthermore, vitamin D deficiency has been shown to reduce the expression of antimicrobial peptides (_-defensin, cathelicidin), which act against enveloped viruses [4,5]. Decreased sACE2 and cellular viral defense might be some mechanisms explaining how low vitamin D modulate SARS-CoV-2 infectibility.

1. doi: 10.1016/j.injury.2016.09.025

2. doi: 10.1152/ajplung.00071.2009

3. doi: 10.3390/ijms22105251

4. doi: 10.1007/s11154-021-09679-5

5. doi: 10.1080/14787210.2021.1941871

Gut microbiota

Gut dysbiosis (alteration of gut microbiota)

The human gut expresses high levels of ACE2 [1-3], and SARS-CoV-2 infection of human enterocytes in vitro is supported by strong evidence [4-6]. However human healthy gut may not be permeable to viral entry due notably to the protective multi-layers of the intestinal barrier including the mucus layer [5]. The colonic mucus barrier is shaped by the composition of the gut microbiota [7]. Thus, individuals with altered mucosal barrier (gut dysbiosis) might be more vulnerable to gastrointestinal SARS-CoV-2 infection [8]. Further research is needed to acquire a comprehensive understanding of the experimental and clinical conditions under which SARS-CoV-2 productively infects enterocytes.

1. doi: 10.1002/path.1570

2. doi: 10.1038/s41575-021-00416-6

3.doi: 10.3390/genes1160645

4.doi: 10.1126/science.abc.1669

5.doi: 10.1126/sciimmunol.abc.3582

6. doi: 10.1038/s41467-021-25729-7

7.doi: 10.15252/embr.20139263

8.doi: 10.3390/jcm11195691

Therapeutic intervention against COVID-19. Remdesivir

Is a prodrug of adenosine analogue, which binds to the viral RNA-dependent RNA polymerase (RdRp) and inhibits viral replication inside cells through premature termination of RNA transcription [1 – 4].

1) (EMA), E.M.A. Veklury. 2021.

Available online: https://www.ema.europa.eu/en/medicines/human/EPAR/veklury (accessed on 12 May 2022)

2) 10.1038/s41467-020-20542-0

3) 10.1016/j.cegh.2020.07.011

4) 10.1038/s41586-020-2423-5

  Molnupiravir

Is an isopropyl ester prodrug, which is cleaved in plasma by host esterases to an active nucleoside analog b-D-N4-hydroxycytidine (NHC) [1]. After entering host cells, it is intracellularly transformed into its active form, β-DN4- hydroxycytidine-triphosphate (NHC triphosphate) [2,3]. This then targets the RdRp, which is virally encoded and competitively inhibits the cytidine and uridine triphosphates and incorporates Molnupiravir instead. The RdRp (RNA-dependent RNA polymerase) enzyme of SARS-CoV-2 uses the NHC triphosphate as a substrate instead of the cytidine and uridine triphosphates and then incorporates either A or G in the RdRp active centres, forming stable complexes, thus escaping proof reading by the synthesis of a mutated RNA [4,5]. As a result, the virus can no longer reproduce. This mechanism of action (the accumulation of mutations) is referred to as viral error catastrophe [2].

1) 10.1016/j.trsl.2019.12.002

2) 10.1126/science.abb7498

3) 10.1128/AAC.00766-18

4) 10.1038/s41594-021-00651-0

5) 10.1016/j.jbc.2021.100770

  Nirmatrelvir (formerly PF-07321332, Paxlovid™)

Is an orally bioavailable 3C-like protease (3CL PRO) inhibitor that is the subject of phase 1 clinical trial NCT04756531 and the phase 2/3 clinical trials (NCT04960202 and NCT05011513, NCT04756531, NCT04960202 and NCT05011513). A 3CLpro antagonist will be highly specific to SARSCoV-2 and will have minimal side effects because 3Clpro shares no homology with human proteases [1,2]. The SARS-CoV-2 genome encodes two polyproteins (pp1a and pp1ab) and four structural proteins [3,4]. The polyproteins are cleaved by the critical SARSCoV-2 main protease (Mpro, also referred to as 3CL protease) at eleven different sites to yield shorter, non-structural proteins [5,6]. Without the activity of the 3CL PRO, nonstructural proteins cannot be released to perform their functions, inhibiting viral replication [7–9].

1) 10.1126/science.abb4489

2) 10.1007/s13238-013-2841-3

3) 10.1038/s41586-020-2008-3

4) 10.1038/s41586-020-2012-7

5) 10.1021/acs.jmedchem.5b01461

6) 10.1038/s41586-020-2223-y

7) 10.1007/s10930-020-09933-w

8) 10.1073/pnas.1601327113

9) 10.1002/med.21783  


 Air pollution
 

Air pollution induces increased expression of ACE2 which may result in increased viral entry and coronavirus production. 

Increased ACE2 expression has been reported in the respiratory system in response to air pollution exposure (1-4). Increased expression may affect susceptibility to SARS-CoV-2 infection. Similarly, some constituents of air pollution (PM, ozone) have been reported to increase the expression of TMPRSS2. (3, 5-6)

1) https://doi.org/10.1186/s12989-015-0094-4

2) 10.1016/j.burns.2015.04.010

3) 10.1016/j.envres.2021.110722

4) 10.3390/ijerph17155573

5) 10.1186/s12989-021-00404-3

6) https://doi.org/10.1038/s41598-022-04906-8

Diet Chemicals found in foods impact viral replication
  • Pelargonidin, found in red and black berries, was shown to dose-dependently block SARS-CoV-2 binding to ACE2, reduce SARS-CoV-2 replication in vitro and reduce ACE2 expression [213].
  • Further evidence comes from SARS-CoV. Many plant-derived terpenoids and curcumin inhibited viral replication in vitro [218].

213: http://doi.org/10.1016/j.bcp.2021.114564

218: http://doi.org/10.1021/jm070295s

Response-response Relationship
Provides sources of data that define the response-response relationships between the KEs.  More help
Time-scale
Information regarding the approximate time-scale of the changes in KEdownstream relative to changes in KEupstream (i.e., do effects on KEdownstream lag those on KEupstream by seconds, minutes, hours, or days?). More help
Known Feedforward/Feedback loops influencing this KER
Define whether there are known positive or negative feedback mechanisms involved and what is understood about their time-course and homeostatic limits. More help

Domain of Applicability

A free-text section of the KER description that the developers can use to explain their rationale for the taxonomic, life stage, or sex applicability structured terms. More help

References

List of the literature that was cited for this KER description. More help