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Event: 2296

Key Event Title

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Reduced Pacemaker Activity in SA Node

Short name
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Reduced Pacemaker Activity in SA Node
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Biological Context

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Level of Biological Organization
Cellular

Cell term

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Organ term

The location/biological environment in which the event takes place.The biological context describes the location/biological environment in which the event takes place.  For molecular/cellular events this would include the cellular context (if known), organ context, and species/life stage/sex for which the event is relevant. For tissue/organ events cellular context is not applicable.  For individual/population events, the organ context is not applicable.  Further information on Event Components and Biological Context may be viewed on the attached pdf. More help

Key Event Components

The KE, as defined by a set structured ontology terms consisting of a biological process, object, and action with each term originating from one of 14 biological ontologies (Ives, et al., 2017; https://aopwiki.org/info_pages/2/info_linked_pages/7#List). Biological process describes dynamics of the underlying biological system (e.g., receptor signalling).Biological process describes dynamics of the underlying biological system (e.g., receptor signaling).  The biological object is the subject of the perturbation (e.g., a specific biological receptor that is activated or inhibited). Action represents the direction of perturbation of this system (generally increased or decreased; e.g., ‘decreased’ in the case of a receptor that is inhibited to indicate a decrease in the signaling by that receptor).  Note that when editing Event Components, clicking an existing Event Component from the Suggestions menu will autopopulate these fields, along with their source ID and description.  To clear any fields before submitting the event component, use the 'Clear process,' 'Clear object,' or 'Clear action' buttons.  If a desired term does not exist, a new term request may be made via Term Requests.  Event components may not be edited; to edit an event component, remove the existing event component and create a new one using the terms that you wish to add.  Further information on Event Components and Biological Context may be viewed on the attached pdf. More help

Key Event Overview

AOPs Including This Key Event

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AOP Name Role of event in AOP Point of Contact Author Status OECD Status
hyperpolarization-activated cyclic nucleotide-gated (HCN) channels KeyEvent Young Jun Kim (send email) Under development: Not open for comment. Do not cite

Taxonomic Applicability

Latin or common names of a species or broader taxonomic grouping (e.g., class, order, family) that help to define the biological applicability domain of the KE.In many cases, individual species identified in these structured fields will be those for which the strongest evidence used in constructing the AOP was available in relation to this KE. More help

Life Stages

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Sex Applicability

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Key Event Description

A description of the biological state being observed or measured, the biological compartment in which it is measured, and its general role in the biology should be provided. More help

Sinoatrial (SA) node pacemaker cells are specialized cells responsible for regulating the rhythm of the heart. These cells are also referred to as conduction cells or pacemaker cells and can be divided into two main types:

Sinoatrial (SA) node pacemaker cells are specialized cells responsible for regulating the rhythm of the heart. These cells are also referred to as conduction cells or pacemaker cells and can be divided into two main types:

1. True Pacemaker Cells

  • Located at the core of the SA node, these cells possess the ability to autonomously generate electrical signals.
  • They exhibit automatic depolarization characteristics, allowing them to generate electrical signals regularly without external stimuli.
  • Their function relies primarily on a unique combination of ion channels, including:
    • HCN Channels (Hyperpolarization-activated cyclic nucleotide-gated channels): These generate the "funny current (If)," which drives the heart's rhythm.
    • Ca²⁺ Channels (T-type and L-type): Contribute to depolarization of the cell membrane.
    • K⁺ Channels (Specific potassium channels): Aid in repolarization and stabilization of the cells.

2. Surrounding Atrial Cells

  • These cells are located around the periphery of the SA node and do not directly function as pacemaker cells.
  • Instead, they play a role in conducting the signals generated by the SA node to the atrium.
  • Compared to the core cells of the SA node, these are less specialized and function as part of the heart's conduction system.

How It Is Measured or Detected

A description of the type(s) of measurements that can be employed to evaluate the KE and the relative level of scientific confidence in those measurements.These can range from citation of specific validated test guidelines, citation of specific methods published in the peer reviewed literature, or outlines of a general protocol or approach (e.g., a protein may be measured by ELISA). Do not provide detailed protocols. More help

1. Electrophysiological Measurements

Electrophysiology provides direct measurement of the electrical activity of SA node cells.

a. Patch-Clamp Technique

  • Purpose: Records ionic currents across the cell membrane.
  • Application:
    • Measures specific currents (e.g., If current through HCN channels, Ca²⁺, and K⁺ currents).
    • Characterizes action potentials in single pacemaker cells.
  • Process: A glass micropipette electrode is used to form a tight seal with the cell membrane, allowing precise current or voltage recording.

b. Microelectrode Array (MEA)

  • Purpose: Measures electrical signals from a population of cells in culture.
  • Application: Detects spontaneous action potentials generated by pacemaker cells.
  • Process: Cells are cultured on an array of electrodes that detect extracellular field potentials.

c. Optical Mapping

  • Purpose: Monitors voltage changes across a tissue.
  • Application: Useful for observing SA node function in situ or in isolated tissue.
  • Process: Voltage-sensitive dyes are used to track electrical activity visually.

2. Calcium Imaging

  • Purpose: Tracks intracellular calcium transients that occur during pacemaker activity.
  • Application:
    • Detects calcium cycling associated with action potentials.
    • Evaluates the role of calcium channels in SA node cells.
  • Process: Fluorescent calcium-sensitive dyes (e.g., Fluo-4 or Fura-2) are used to measure real-time changes in intracellular calcium.

3. Molecular and Genetic Techniques

  • a. Gene Expression Analysis

    • Purpose: Measures the expression of key ion channel genes (e.g., HCN4, T-type, and L-type Ca²⁺ channels).
    • Techniques: qPCR, RNA sequencing, or in situ hybridization.
  • b. Protein Detection

    • Purpose: Identifies ion channel proteins involved in pacemaker activity.
    • Techniques: Western blotting, immunocytochemistry, or flow cytometry.

4. Functional Measurements

  • a. ECG (Electrocardiogram)

    • Purpose: Detects overall heart rhythm and indirectly assesses SA node function.
    • Application: Identifies issues like sinus bradycardia or sinus arrest.
  • b. Isolated Tissue Studies

    • Purpose: Measures spontaneous contractions and electrical activity in isolated SA node tissue.
    • Techniques: Use of organ baths or Langendorff-perfused heart models.

5. Pharmacological Testing

  • Purpose: Evaluates the response of SA node cells to drugs targeting ion channels.
  • Application:
    • If inhibitors (e.g., Ivabradine) to study funny current activity.
    • Calcium or potassium channel blockers to assess their contribution to pacemaker function.

6. Imaging Techniques

  • a. Confocal Microscopy

    • Purpose: Visualizes ion channel localization and structural features of SA node cells.
  • b. MRI/CT Scans

    • Purpose: Provides anatomical imaging of the SA node in large-scale studies, though resolution is limited.

7. Computational Modeling

  • Purpose: Simulates pacemaker activity based on measured parameters like ionic currents and channel expression.
  • Application: Predicts responses to interventions or mutations in SA node cells.

Domain of Applicability

A description of the scientific basis for the indicated domains of applicability and the WoE calls (if provided).  More help

(1) iPSC-Derived Cardiomyocytes

  • Products:
    • Axol Bioscience: "iPSC-derived Atrial-like Cardiomyocytes"
    • Ncardia: "Cor.4U® Human iPSC-Derived Cardiomyocytes"
  • Characteristics:
    • Human-induced pluripotent stem cell-derived cardiomyocytes that can mimic pacemaker activity or cardiac contractions.
    • They express key ion channels, including HCN channels, which are essential for pacemaker activity.
  • Applications:
    • Drug response studies.
    • Ion channel activity recording.
    • Signal propagation analysis.

(2) H9C2 (Rat Cardiomyocyte-like Cell Line)

  • Products:
    • Available from Sigma-Aldrich, ATCC, and other providers.
  • Characteristics:
    • A cell line derived from rat cardiac muscle cells, commonly used for basic cardiac physiology research.
    • While not identical to SA node cells, they can be utilized to study general cardiac conduction properties.
  • Applications:
    • Basic research on myocardial physiology and ion channels.

2. Cells for Ion Channel-Specific Experiments

Specific ion channel functions related to SA node properties can be analyzed using these cell models.

(1) HEK293 (Human Embryonic Kidney 293 Cells)

  • Products:
    • Available from Sigma-Aldrich, Thermo Fisher, and other sources.
  • Characteristics:
    • Easily transfected to overexpress specific ion channels (e.g., HCN, Ca²⁺, K⁺).
    • Suitable for analyzing the funny current (If), which is critical for SA node function.
  • Applications:
    • Electrophysiological characterization of ion channel properties.

(2) CHO (Chinese Hamster Ovary Cells)

  • Products:
    • Available from ATCC and Thermo Fisher.
  • Characteristics:
    • A stable gene expression system suitable for ion channel studies.
  • Applications:
    • Expressing specific ion channels for drug screening or functional analysis.

3. Other Relevant Cell Models

(1) HL-1 Cardiomyocyte Cell Line

  • Products:
    • Available from Sigma-Aldrich or specific research institutions.
  • Characteristics:
    • Mouse atrial cell line with properties similar to the SA node conduction system.
  • Applications:
    • Electrophysiological analysis.
    • Intercellular signal propagation studies.

(2) Custom Primary SA Node Cells (Primary Cells)

  • Products:
    • ScienCell: "Primary Cardiomyocytes"
    • Cell Applications Inc.: "Human Cardiomyocytes"
  • Characteristics:
    • Primary cells directly derived from the SA node.
    • Offer highly specific SA node properties but are expensive and challenging to maintain.
  • Applications:
    • Highly specialized SA node research.

References

List of the literature that was cited for this KE description. More help

The sinoatrial node, a heterogeneous pacemaker structure by M.R. Boyett et al. (2000)

Factors Controlling Pacemaker Action in Cells of the Sinoatrial Node by J. Jalife and M. Moe (1965)

Sino-Atrial Nodal Cells of Mammalian Hearts: Ionic Currents and Gene Expression by M. R. Boyett and H. Honjo(2003)