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Relationship: 2809

Title

A descriptive phrase which clearly defines the two KEs being considered and the sequential relationship between them (i.e., which is upstream, and which is downstream). More help

Energy Deposition leads to Modified Proteins

Upstream event
The causing Key Event (KE) in a Key Event Relationship (KER). More help
Downstream event
The responding Key Event (KE) in a Key Event Relationship (KER). More help

Key Event Relationship Overview

The utility of AOPs for regulatory application is defined, to a large extent, by the confidence and precision with which they facilitate extrapolation of data measured at low levels of biological organisation to predicted outcomes at higher levels of organisation and the extent to which they can link biological effect measurements to their specific causes.Within the AOP framework, the predictive relationships that facilitate extrapolation are represented by the KERs. Consequently, the overall WoE for an AOP is a reflection in part, of the level of confidence in the underlying series of KERs it encompasses. Therefore, describing the KERs in an AOP involves assembling and organising the types of information and evidence that defines the scientific basis for inferring the probable change in, or state of, a downstream KE from the known or measured state of an upstream KE. More help

AOPs Referencing Relationship

AOP Name Adjacency Weight of Evidence Quantitative Understanding Point of Contact Author Status OECD Status
Deposition of energy leading to occurrence of cataracts adjacent Moderate Moderate Vinita Chauhan (send email) Open for citation & comment WPHA/WNT Endorsed

Taxonomic Applicability

Latin or common names of a species or broader taxonomic grouping (e.g., class, order, family) that help to define the biological applicability domain of the KER.In general, this will be dictated by the more restrictive of the two KEs being linked together by the KER.  More help
Term Scientific Term Evidence Link
human Homo sapiens Moderate NCBI
rat Rattus norvegicus High NCBI
mouse Mus musculus Moderate NCBI

Sex Applicability

An indication of the the relevant sex for this KER. More help
Sex Evidence
Unspecific High

Life Stage Applicability

An indication of the the relevant life stage(s) for this KER.  More help
Term Evidence
All life stages High

Key Event Relationship Description

Provides a concise overview of the information given below as well as addressing details that aren’t inherent in the description of the KEs themselves. More help

Energy deposition, such as that released from radiation (ionizing or non-ionizing) in sensitive lens cells can lead to protein modifications such as phosphorylation, disulfide bond formation, D-Asp formation, and carbonylation, among other changes (Hamada et al., 2014; Lipman et al., 1988; Reisz et al., 2014). It is important to note that ionizing and non-ionizing radiation work by different mechanisms; ionizing radiation has enough energy to remove tightly bound electrons from atoms, leading to the formation of ions (charged particles), while the absorption of non-ionizing radiation leads to molecular vibrations and rotations, resulting in heat generation (Alcócer et al., 2020). The modifications arise as energy deposited onto a cell interacts with molecules (e.g. proteins, lipids, DNA), altering the redox balance of the cell, and resulting in amino acid modifications (Neves-Petersen et al., 2012). These changes cause structural and functional molecular-level damage to the proteins, such as aggregation (Reisz et al., 2014; Hamada et al., 2014). However, the extent of damage from different types of protein modifications would vary as these protein changes may be short-lived due to the cell life cycle and the associated regulation of the protein (Basisty et al., 2018).  

Under homeostatic conditions, cells inherently have a set amount of total protein that are soluble (Pace et al., 2004). These properties can be disrupted by the deposition of energy. The interaction of a soluble protein with large amounts of energy can change its molecular weight and solubility through deamidation and the formation of disulfide bonds (Hanson et al., 2000; Reddy 1990; Miesbauer et al., 1994).  

Other types of protein modification can also occur, including protein carbonylation and D-Asp formation (Reisz et al., 2014; Hamada et al., 2014). Protein carbonylation, a result of reactive oxygen species (ROS), is the post-translational addition of carbonyl to the protein’s side chain, these can observably be increased when a cell is exposed to ionizing radiation (Resiz et al., 2014). Inversion of amino acids from the L to D conformation can also occur in response to the ionization events or thermal energy released from radiation, this contributes to protein quaternary structure changes (Fujii et al., 2004). 

Evidence Collection Strategy

Include a description of the approach for identification and assembly of the evidence base for the KER. For evidence identification, include, for example, a description of the sources and dates of information consulted including expert knowledge, databases searched and associated search terms/strings.  Include also a description of study screening criteria and methodology, study quality assessment considerations, the data extraction strategy and links to any repositories/databases of relevant references.Tabular summaries and links to relevant supporting documentation are encouraged, wherever possible. More help

The strategy for collating the evidence to support the relationship is described in Kozbenko et al 2022. Briefly, a scoping review methodology was used to prioritize studies based on a population, exposure, outcome, endpoint statement.

Evidence Supporting this KER

Addresses the scientific evidence supporting KERs in an AOP setting the stage for overall assessment of the AOP. More help

Overall Weight of Evidence: Moderate 

Biological Plausibility
Addresses the biological rationale for a connection between KEupstream and KEdownstream.  This field can also incorporate additional mechanistic details that help inform the relationship between KEs, this is useful when it is not practical/pragmatic to represent these details as separate KEs due to the difficulty or relative infrequency with which it is likely to be measured.   More help

The biological plausibility of the relationship between deposited energy leading to modified proteins is moderately supported by the literature. It is well accepted that deposition of energy, from ionizing sources (γ-rays, X-rays) and non-ionizing sources (ultraviolet (UV) radiation) can increase protein modifying events, resulting in structural changes to the protein (Hamada et al., 2014; Van Kuijk et al., 1991; Lipman et al., 1988; Reisz et al., 2014). These modifications include deamidation, oxidation, and disulfide bonds (Hanson et al., 2000; Kim et al., 2016; Kim et al., 2015; Lipman et al., 1988). Human, mouse, and rat models have been studied and prominent changes observed include increased cross-linking, altered water-solubility, and increased aggregation (Fochler & Durchschlag, 1997; Van Kuijk, 1991; Davies & Delsignore, 1987).  

Deposition of energy can alter the protein profile within a cell leading to a decrease in water-soluble proteins and an increase in water-insoluble proteins. This arises from structural-level modifications to the protein amino acids. The amino acids that are particularly at risk are aromatic amino acids, as well as cysteine residues, which are known to have the lowest redox potential (Reisz et al., 2014). Aromatic amino acids can be converted into photosensitizers (Walrant & Santus, 1974). Tryptophan, which is present in alpha crystalline molecules, can also be converted into kynurenine when exposed to UV radiation, through the destabilization of its structural protein folds (Xia et al., 2013). Exposure to UV and photons, has been associated with the aggregation of water-soluble proteins and an increase in insoluble protein content (Van Kuijk, 1991; Wang et al., 2010; Hamada et al., 2014;). Stressors such as γ-rays can also lead to protein oxidation via reactive oxygen species (ROS), including protein cross-linking and hydrophobic protein interactions (Davies & Delsignore, 1987; Lee & Song, 2002). Additionally, at high concentrations, ROS from radiation can oxidize and cross-link proteins, producing insoluble protein clumps (Young, 1994). 

Protein aggregation has also been shown to result from the formation of disulfide bonds. (Lipman et al., 1988). It is believed that when energy is deposited, it causes the protein molecule to unfold from its native structural conformation and aggregate through disulfide connections with other modified proteins (Chen et al., 2013). Treatment with a reducing agent that cleaves disulfide bonds results in the release of the aggregates, suggesting that the bonds between the sulfide sites have an impact on protein aggregation (Reddy, 1990). 

Uncertainties and Inconsistencies
Addresses inconsistencies or uncertainties in the relationship including the identification of experimental details that may explain apparent deviations from the expected patterns of concordance. More help

Although the relationship is well- supported, the degree and type of modification can be variable depending on the exposure conditions. Significant increases in oxidized crystallin protein are seen anywhere from 5 Gy in vivo (Kim et al. 2015) to 50 Gy in vivo (Kim et al., 2016) to 270 Gy in vitro (Finley et al., 1998). This relationship is difficult to predict. 

Known modulating factors

This table captures specific information on the MF, its properties, how it affects the KER and respective references.1.) What is the modulating factor? Name the factor for which solid evidence exists that it influences this KER. Examples: age, sex, genotype, diet 2.) Details of this modulating factor. Specify which features of this MF are relevant for this KER. Examples: a specific age range or a specific biological age (defined by...); a specific gene mutation or variant, a specific nutrient (deficit or surplus); a sex-specific homone; a certain threshold value (e.g. serum levels of a chemical above...) 3.) Description of how this modulating factor affects this KER. Describe the provable modification of the KER (also quantitatively, if known). Examples: increase or decrease of the magnitude of effect (by a factor of...); change of the time-course of the effect (onset delay by...); alteration of the probability of the effect; increase or decrease of the sensitivity of the downstream effect (by a factor of...) 4.) Provision of supporting scientific evidence for an effect of this MF on this KER. Give a list of references.  More help
Modulating Factor (MF) MF Specification Effect(s) on the KER Reference(s)

Age 

The absorption of radiation in the lens of the eye, such as UV, increases with age.   Free UV filters exist in the eye to help block UV from interacting with proteins in the lens. The filters, such as tryptophan metabolites, degrade as people age, reducing the protection for proteins in the lens.  Bron et al., 2000; Davies & Truscott, 2001; Truscott & Friedrich, 2016 
Free Radical Scavengers  The addition of antioxidants attenuates the effect of energy deposition.   Sodium Azide (NaN3) and Cystamine, free radical scavengers, reduce the amount of cross-linking of crystalline proteins.   Zigler & Goosey, 1981; Shin et al., 2004 
Response-response Relationship
Provides sources of data that define the response-response relationships between the KEs.  More help
Time-scale
Information regarding the approximate time-scale of the changes in KEdownstream relative to changes in KEupstream (i.e., do effects on KEdownstream lag those on KEupstream by seconds, minutes, hours, or days?). More help
Known Feedforward/Feedback loops influencing this KER
Define whether there are known positive or negative feedback mechanisms involved and what is understood about their time-course and homeostatic limits. More help

N/A

Domain of Applicability

A free-text section of the KER description that the developers can use to explain their rationale for the taxonomic, life stage, or sex applicability structured terms. More help

This KER is plausible in all life stages, sexes, and organisms. The majority of the evidence is from in vivo male adult rats, and in vitro bovine models that do not specify sex. 

References

List of the literature that was cited for this KER description. More help

Abdelkawi, S. (2012), “Lens crystallin response to whole body irradiation with single and fractionated doses of gamma radiation”, International Journal of Radiation Biology, Vol.88/8, Informa UK Ltd, London, https://doi.org/10.3109/09553002.2012.695097.  

Abdelkawi, S., M. Abo-Elmagd and H. Soliman. (2008), “Development of cataract and corneal opacity in mice due to radon exposure”, Radiation Effects and Defects in Solids, Vol.163/7, Taylor & Francis, Oxfordshire, https://doi.org/10.1080/10420150701249603. 

Anbaraki, A. et al. (2016), “Preventive role of lens antioxidant defense mechanism against riboflavin-mediated sunlight damaging of lens crystallin”, International Journal of Biological Macromolecules, Vol.91, Elsevier, Amsterdam, https://doi.org/10.1016/j.ijbiomac.2016.06.047. 

Andley, U. et al. (1990), “Effect of ultraviolet-b radiation on protein synthesis in cultured ens epithelial cells”, Current Eye Research, Vol.9/11, Taylor & Francis, Oxfordshire, https://doi.org/10.3109/02713689008997583.  

Basisty, Nathan et al. (2018) “Protein Turnover in Aging and Longevity”, Proteomics, Vol.18, https://doi.org/10.1002/pmic.201700108 

Bloemendal, H. et al. (2004), “Ageing and vision: structure, stability and function of lens crystallins”, Progress in Biophysics and Molecular Biology, Vol.86/3, Elsevier, Amsterdam, https://doi.org/10.1016/J.PBIOMOLBIO.2003.11.012.  

Chen, Y. et al. (2013), “Ocular aldehyde dehydrogenases: Protection against ultraviolet damage and maintenance of transparency for vision”, Progress in Retinal and Eye Research, Vol.33/1, Elsevier, Amsterdam, https://doi.org/10.1016/j.preteyeres.2012.10.001. 

Davies, K.J.A. and M.E. Delsignore. (1987), “Protein damage and degradation by oxygen radicals. 3. Modification of secondary and tertiary structure”, Journal of Biological Chemistry, Vol.262/20, American Society for Biochemistry and Molecular Biology, Rockville, https://doi.org/10.1016/s0021-9258(18)48020-9. 

Davies, M. and R. Truscott. (2001), “Photo-oxidation of proteins and its role in cataractogenesis”, Journal of Photochemistry and Photobiology B: Biology, Vol.63/1-3, Elsevier, Amsterdam, https://doi.org/10.1016/s1011-1344(01)00208-1. 

Finley, E. et al. (1998), “Radiolysis-induced oxidation of bovine alpha-crystallin", Photochemistry and Photobiology, Vol.68/1, Wiley-Blackwell. Hoboken, https://doi.org/10.1111/j.1751-1097.1998.tb03245.x. 

Fochler, C. and H. Durchschlag. (1997), “Investigation of irradiated eye-lens proteins by analytical ultracentrifugation and other techniques”, Progress in Colloid and Polymer Science, Vol.107, Springer, Berlin, https://doi.org/10.1007/BFb0118020. 

Fujii, N., H. Uchida, and T. Saito (2004), “The damaging effect of UV-C irradiation on lens alpha-crystallin”, Molecular Vision, Vol. 10, United States, pp. 814-820 

Geiger, T. and S. Clarke. (1987), “Deamidation, isomerization, and racemization at asparaginyl and aspartyl residues in peptides: succinimide-linked reactions that contribute to protein degradation”, Journal of Biological Chemistry, Vol.262, American Society for Biochemistry and Molecular Biology, Rockville, https://doi.org/10.1016/s0021-9258(19)75855-4. 

Giblin, F. et al. (2002), “UVA light in vivo reaches the nucleus of the guinea pig lens and produces deleterious, oxidative effects”, Experimental Eye Research, Vol.75/4, Academic Press Inc, Cambridge, https://doi.org/10.1006/exer.2002.2039. 

Hamada, N. et al. (2014), “Emerging issues in radiogenic cataracts and cardiovascular disease”, Journal of Radiation Research, Vol.55/5, Oxford University Press, Oxford, https://doi.org/10.1093/jrr/rru036.  

Hanson, S. et al. (2000), “The major in vivo modifications of the human water-insoluble lens crystallins are disulfide bonds, deamidation, methionine oxidation and backbone cleavage”, Experimental Eye Research, Vol.71/2, Academic Press Inc, Cambridge, https://doi.org/10.1006/EXER.2000.0868. 

Kim, I. et al. (2016), “One-shot LC–MS/MS analysis of post-translational modifications including oxidation and deamidation of rat lens α- and β-crystallins induced by γ-irradiation”, Amino Acids, Vol.48/12, Springer, Berlin, https://doi.org/10.1007/s00726-016-2324-y.  

Kim, I. et al. (2015), “Site specific oxidation of amino acid residues in rat lens γ-crystallin induced by low-dose γ-irradiation”, Biochemical and Biophysical Research Communications, Vol.466/4, Elsevier, Amsterdam, https://doi.org/10.1016/j.bbrc.2015.09.075. 

Kozbenko, T. et al. (2022), “Deploying elements of scoping review methods for adverse outcome pathway development: a space travel case example”, International Journal of Radiation Biology, 1–12. https://doi.org/10.1080/09553002.2022.2110306 

Kuan, Y. et al. (2013), “Radiation processing of food proteins – A review on the recent developments”, Trends in Food Science & Technology, Vol.30/2, pp.105–120. 

Lee, Y. and K.B. Song. (2002), “Effect of gamma-irradiation on the molecular properties of myoglobin”, Journal of Biochemistry and Molecular Biology, Vol.35/6, Biochemical Society of the Republic of Korea, Seoul, https://doi.org/10.5483/bmbrep.2002.35.6.590. 

Lipman, R., B. Tripathi and R. Tripathi. (1988), “Cataracts induced by microwave and ionizing radiation”, Survey of Ophthalmology, Vol.33/3, Elsevier, Amsterdam, https://doi.org/10.1016/0039-6257(88)90088-4. 

Miesbauer, L. R. et al. (1994), “Post-translational modifications of the water soluble human lens crystallins from young adults”, Journal of Biological Chemistry, Vol.269, American Society for Biochemistry and Molecular Biology, Rockville, https://doi.org/10.1016/s0021-9258(18)99902-3. 

Moran, S. et al. (2013), “Amyloid fiber formation in human γd-crystallin induced by UV-B photodamage”, Biochemistry, Vol.52/36, American Chemical Society Publications, Washington, https://doi.org/10.1021/bi4008353. 

Pace, C.N. et al. (2004), “Protein structure, stability and solubility in water and other solvents”, Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, Vol.359, Royal Society, London, https://doi.org/10.1098/RSTB.2004.1500. 

Reddy, V.N. (1990), “Glutathione and its function in the lens—An overview”, Experimental Eye Research, Vol.50/6, Academic Press Inc, Cambridge, https://doi.org/10.1016/0014-4835(90)90127-G. 

Reisz, J. et al. (2014), “Effects of ionizing radiation on biological molecules - mechanisms of damage and emerging methods of detection”, Antioxidants and Redox Signaling, Vol.21(2), Mary Ann Liebert Inc, Larchmont, https://doi.org/10.1089/ars.2013.5489.  

Shang, F., L. Huang and A. Taylor. (1994), “Degradation of native and oxidized beta-and gamma-crystallin using bovine Lens epithelial cell and rabbit reticulocyte extracts”, Current Eye Research, Vol.13/6, Taylor & Francis, Oxfordshire, https://doi.org/10.3109/02713689408999870. 

Sherif, S. and S. Abdelkawi. (2006). “Effect of fractionated dose of whole body gamma irradiation on eye lens proteins of rats”, Isotope and Radiation Research, Vol.38/3, Middle Eastern Regional Radioisotope Center for Arab Countries, Cario, pp.547-558. 

Shin, D., et al. (2004), “Cell type-specific activation of intracellular transglutaminase 2 by oxidative stress or ultraviolet irradiation: Implications of transglutaminase 2 in age-related cataractogenesis”, Journal of Biological Chemistry, Vol.279/15, The American Society for Biochemistry and Molecular Biology, Rockville, https://doi.org/10.1074/jbc.M308734200. 

Simpanya, F,M. et al. (2008), “Measurement of lens protein aggregation in vivo using dynamic light scattering in a guinea Pig/UVA model for nuclear cataract”, Photochemistry and Photobiology, Vol.84/6, Wiley-Blackwell, Hoboken, https://doi.org/10.1111/j.1751-1097.2008.00390.x.  

Truscott, R. and M. Friedrich. (2016), “The etiology of human age-related cataract. Proteins don't last forever”, Biochimica et Biophysica Acta, Vol.1890/1, Elsevier, Amsterdam, https://doi.org/10.1016/j.bbagen.2015.08.016. 

Van Kuijk, F. (1991), “Effects of ultraviolet light on the eye: Role of protective glasses”, Environmental Health Perspectives, Vol.96/30, National Institute of Environmental Health Sciences, Durham, https://doi.org/10.1289/ehp.9196177. 

Walrant, P. and R. Santus. (1974), “Ultraviolet and N-Formyl-Kynurenine-Sensitized Photoinactivation of Bovine Carbonic Anhydrase: An Internal Photodynamic Effect”, Photochemistry and Photobiology, Vol.20/5, Wiley-Blackwell, Hoboken, https://doi.org/10.1111/j.1751-1097.1974.tb06600.x. 

Wang, W., S. Nema and D. Teagarden (2010), “Protein aggregation- Pathways and influencing factors”, International Journal of Pharmaceutics, Vol.390/2, Elsevier, Amsterdam, https://doi.org/10.1016/j.ijpharm.2010.02.025. 

Xia, Z. et al. (2013), “UV-radiation Induced Disruption of Dry-Cavities in Human γD-crystallin Results in Decreased Stability and Faster Unfolding”, Sci Rep Vol.3, https://doi.org/10.1038/srep01560. 

Young, R. (1994), “The family of sunlight-related eye diseases”, Optometry and Vision Science, Vol.71/2, Lippincott Williams & Wilkins, Philadelphia, https://doi.org/10.1097/00006324-199402000-00013. 

Zigler, S.J. and J. Goosey. (1981), “Photosensitized Oxidation in the Ocular Lens: Evidence for Photosensitizers Endogenous To the Human Lens”, Photochemistry and Photobiology, Vol.33/6, Wiley-Blackwell, Hoboken, https://doi.org/10.1111/j.1751-1097.1981.tb05505.x.  

Zigman, S. et al. (1975), “The response of mouse ocular tissues to continuous near-UV light exposure”, Investigative Ophthalmology, Vol.14/September, Association for Research in Vision and Ophthalmology, Rockville, pp.710-713.