SNAPSHOT
Created at: 2018-02-23 15:17
AOP ID and Title:
Graphical Representation

Status
Author status | OECD status | OECD project | SAAOP status |
---|---|---|---|
Under development: Not open for comment. Do not cite | Under Development | 1.52 | Included in OECD Work Plan |
Abstract
Testicular toxicity is of interest for human health risk assessment especially in terms of reproductive and developmental toxicity, however, the testicular toxicity has not fully elucidated. Histone deacetylase (HDAC) inhibitors (HDIs) are approved as anti-cancer drugs since HDIs have apoptotic effect in cancer cells. HDIs includes the short chain fatty acids (e.g., butyrate, valproate, methoxyacetic acid), hydroxamic acids (e.g., suberoylanilide hydroxamic acid or SAHA, Trichostatin A or TSA), cyclic tetrapeptides (e.g., FK-228), benzamides (e.g., N-acetyldinaline and MS-275) and epoxides (depeudecin, trapoxin A), of which MAA especially focused on have the testicular toxicity such as testis atrophy in vivo. The intracellular mechanisms of induction of the spermatocyte apoptosis by HDIs are suggested as HDAC inhibition as molecular initiating event (MIE), histone acetylation increase, p21 expression increase, and cell cycle disorder as key events (KEs). Adverse outcome includes spermatocyte depletion and testis atrophy and weight loss. We propose new adverse outcome pathway (AOP) for histone deacetylase inhibition leading to testicular toxicity.
Summary of the AOP
Events
Molecular Initiating Events (MIE), Key Events (KE), Adverse Outcomes (AO)
Sequence | Type | Event ID | Title | Short name |
---|---|---|---|---|
1 | MIE | 1502 | Histone deacetylase inhibition | Histone deacetylase inhibition |
2 | KE | 1503 | Histone acetylation, increase | Histone acetylation, increase |
3 | KE | 1504 | p21 expression, increase | p21 expression, increase |
4 | KE | 1505 | cell cycle disorder | cell cycle disorder |
5 | KE | 1262 | Apoptosis | Apoptosis |
6 | AO | 1506 | spermatocyte depletion, testis atrophy/weight loss (testicular toxicity) | testicular toxicity |
Key Event Relationships
Upstream Event | Relationship Type | Downstream Event | Evidence | Quantitative Understanding |
---|---|---|---|---|
Histone deacetylase inhibition | adjacent | Histone acetylation, increase | High | High |
Histone acetylation, increase | adjacent | p21 expression, increase | Moderate | Moderate |
p21 expression, increase | adjacent | cell cycle disorder | High | Moderate |
cell cycle disorder | adjacent | Apoptosis | High | Moderate |
Apoptosis | adjacent | spermatocyte depletion, testis atrophy/weight loss (testicular toxicity) | High | Moderate |
Histone deacetylase inhibition | non-adjacent | p21 expression, increase | High | High |
Histone deacetylase inhibition | non-adjacent | cell cycle disorder | High | High |
Histone deacetylase inhibition | non-adjacent | Apoptosis | High | High |
Histone deacetylase inhibition | non-adjacent | spermatocyte depletion, testis atrophy/weight loss (testicular toxicity) | High | High |
Stressors
Name | Evidence |
---|---|
Methoxyacetic acid | High |
Butyrate | High |
Trichostatin A | High |
Overall Assessment of the AOP
Assessment of the Weight-of-Evidence supporting the AOP
Concordance of dose-response relationships
This is a quantitative description on dose-response relationships from MIE to AOP. But some KE relationships individually are not fully supported with dose-response relationships, while there is empirical evidence to support that a change in KEup leads to an appropriate change in the respective KEdown.
Temporal concordance among the key events and adverse outcome
Temporal concordance between MIE and AOP has been described with in vivo experimental data. Empirical evidences show temporal concordance between MIE and the individual KEs, however, the temporal concordance among the individual KEs and AO is not fully elucidated.
Strength, consistency, and specificity of association of adverse outcome and initiating event
The scientific evidence on the linkage between MIE and AO has been described.
Biological plausibility, coherence, and consistency of the experimental evidence
The available data supporting the AOP are logic, coherent and consistent with established biological knowledge, whereas there are possibilities for alternative pathways.
Alternative mechanism(s) that logically present themselves and the extent to which they may distract from the postulated AOP
There are some other important apoptotic pathways that are involved in cell death, as well as other important spermatocyte signaling or mechanism influences testicular toxicity.
p53 pathway
The study in which in vivo administration of trichostatin A (TSA), a HDI, in mice resulted in male meiosis impairment showed the involvement of p53-noxa-caspase-3 apoptotic pathway in TSA-induced spermatocyte apoptosis (Fenic). Other study showed that MAA induced up-regulation of p21 expression is mediated through histone hyperacetylation and independent of p53/p63/p73 (Parajuli).
NF-kappaB pathway
The present AOP focuses on p21 pathway leading to apoptosis, however, the alternative pathway such as NF-kB signaling pathways may be involved in apoptosis of spermatocytes (Wang).
Communication with Sertoli cells
The present AOP focuses on testicular atrophy by HDAC inhibition-induced apoptosis in spermatocytes, however, the signaling in Setoli cells may be involved in testicular atrophy. Sertoli cell secretes GDNF, FGF2, CXCL12 or Ccl9 molecules, which results in the activation of RET, FGFR, CXCR4 or CCR1 signaling in spermatogonial stem cells, respectively (Chen SR and Liu Y).
Decrease in deoxynucleotide pool by MAA
MAA induces decrease in deoxynucleotide pool, resulting apoptosis, which may be an alternative pathway other than p21-mediated pathway (Yamazoe). Inhibition of 5,10-CH2-THF production by MAA may decreases deoxynucleotide pool in spermatocytes (Yamazoe).
Assessment of the quantitative understanding of the AOP
The quantitative understanding of the AOP in terms of indirect relations between HDAC inhibition and testicular atrophy was examined in in vivo experiments (Foster, Miller).
Domain of Applicability
Life Stage ApplicabilityLife Stage | Evidence |
---|---|
Adult, reproductively mature | High |
Term | Scientific Term | Evidence | Links |
---|---|---|---|
human | Homo sapiens | Moderate | NCBI |
mouse | Mus musculus | Moderate | NCBI |
rat | Rattus norvegicus | High | NCBI |
Sex | Evidence |
---|---|
Male | High |
Life stage applicability
Life stage |
Evidence |
Adult, reproductively mature |
Strong |
Taxonomic applicability
Name |
Scientific name |
Evidence |
human |
Homo sapiens |
Moderate |
mouse |
Mus musculus |
Moderate |
rat |
Rattus norvegicus |
Strong |
Sex applicability
Sex |
Evidence |
Male |
Strong |
Essentiality of the Key Events
Molecular Initiating Event |
Support for essentiality |
Histone deacetylase inhibition |
Strong |
Key Event |
Support for essentiality |
Histone acetylation, increase |
Strong |
p21 expression, increase |
Moderate |
Cell cycle disorder |
Moderate |
Apoptosis |
Moderate |
Weight of Evidence Summary
Event |
Description |
Triggers |
Weight of Evidence |
Histone deacetylase inhibition |
Leads to |
Histone acetylation, increase |
Strong |
Histone acetylation, increase |
Leads to |
p21 expression, increase |
Strong |
p21 expression, increase |
Leads to |
Cell cycle disorder |
Strong |
Cell cycle disorder |
Leads to |
Apoptosis |
Strong |
Apoptosis |
Leads to |
Spermatocyte depletion, Testis atrophy/weight loss (Testicular toxicity) |
Moderate |
Histone deacetylase inhibition |
Indirectly Leads to |
p21 expression, increase |
Strong |
Histone deacetylase inhibition |
Indirectly Leads to |
Cell cycle disorder |
Strong |
Histone deacetylase inhibition |
Indirectly Leads to |
Cell death, apoptosis |
Strong |
Histone deacetylase inhibition |
Indirectly Leads to |
Spermatocyte depletion, Testis atrophy/weight loss (Testicular toxicity) |
Strong |
Quantitative Consideration
Event |
Description |
Triggers |
Quantitative understanding |
Histone deacetylase inhibition |
Leads to |
Histone acetylation, increase |
Strong |
Histone acetylation, increase |
Leads to |
p21 expression, increase |
Moderate |
p21 expression, increase |
Leads to |
Cell cycle disorder |
Moderate |
Cell cycle disorder |
Leads to |
Apoptosis |
Moderate |
Apoptosis |
Leads to |
Spermatocyte depletion, Testis atrophy/weight loss (Testicular toxicity) |
Moderate |
Histone deacetylase inhibition |
Indirectly Leads to |
p21 expression, increase |
Strong |
Histone deacetylase inhibition |
Indirectly Leads to |
Cell cycle disorder |
Strong |
Histone deacetylase inhibition |
Indirectly Leads to |
Cell death, apoptosis |
Strong |
Histone deacetylase inhibition |
Indirectly Leads to |
Spermatocyte depletion, Testis atrophy/weight loss (Testicular toxicity) |
Strong |
Considerations for Potential Applications of the AOP (optional)
The present AOP can be used in risk assessment of HDAC inhibitors for the anti-cancer drugs in terms of testicular toxicity. HDAC inhibitors nowadays have been utilized as therapeutics for cancer or neurology disease, and the adverse effects of HDAC inhibitors should be evaluated. This AOP elucidating the pathway from HDAC inhibition through testicular toxicity may provides important insights for potential toxicity of HDAC inhibitors. It also provides a basis for the HDAC inhibition-induced epigenetic alteration and cell death.
References
Fenic I et al. (2008) In vivo application of histone deacetylase inhibitor trichostatin-A impairs murine male meiosis. J Andro 29: 172-185
Parajuli KR et al. (2014) Methoxyacetic acid suppresses prostate cancer cell growth by inducing growth arrest and apoptosis. Am J Clin Exp Urol 2:300-312
Wang C et al. (2017) CD147 regulates extrinsic apoptosis in spermatocytes by modulating NFkB signaling pathways. Oncotarget 8: 3132-3143
Chen S and Liu Y. (2015) Regulation of spermatogonial stem cell self-renewal and spermatocyte meiosis by Sertoli cell signaling. Reproduction 149: R159-R167
Yamazoe Y. et al. (2015) Embryo- and testicular-toxicities of methoxyacetate and the related: a review on possible roles of one-carbon transfer and histone modification. Food Safety 3:92-107
Foster PM et al. (1983) Testicular toxicity of ethylene glycol monomethyl and monoethyl ethers in the rat. Toxicol Appl Pharmacol 69:385-39
Miller RR et al. (1982) Toxicity of methoxyacetic acid in rats. Fundam Appl Toxicol 2: 158-160
Wade MG et al. (2008) Methoxyacetic acid-induced spermatocyte death is associated with histone hyperacetylation in rats. Biol Reprod 78:822-831
Richon VM et al. (2000) Histone deacetylase inhibitor selectively induces p21WAF1 expression and gene-associated histone acetylation. Proc Natl Acad Sci 97:10014-10019
Struhl K. (1998) Histone acetylation and transcriptional regulatory mechanisms. Gene Dev 12:599-606
O’Reilly MA et al (2001) The cyclin-dependent kinase inhibitor p21 protects the lung from oxidative stress. Am J Respir Cell Mol Biol 24: 703-710
Wu R et al. (2016) microRNA-497 induces apoptosis and suppressed proliferation via the Bcl-2/Bax-caspase9-caspase 3 pathway and cyclin D2 protein in HUVECs. PLoS One 11: e0167052
Li L et al. (2012) Downregulation of microRNAs miR-1, -206 and -29 stabilizes PAX3 and CCND2 expression in rhabdomyosarcoma. Lab Invest 92: 571-583
Mermelshtein A et al. (2005) Expression of F-type cyclins in colon cancer and in cell lines from colon carcinomas. Br J Cancer 93: 33
Dong Q et al. (2010) microRNA let-7a inhibits proliferation of human prostate cancer cells in vitro and in vivo by targeting E2F2 and CCND2. PLoS One 5: e10147
Kerr JFR et al. (1972) Apoptosis: a basic biological phenomenon with wide-ranging implications in tissue kinetics. Br J Cancer 26: 239-257
Lagger G et al. (2002) Essential function of histone deacetylase 1 in proliferation control and CDK inhibitor repression. EMBO J 21:2672-2681
Schroeder FA et al. (2013) A selective HDAC 1/2 inhibitor modulates chromatin and gene expression in brain and alters mouse behavior in two mood-related tests. PLoS One 8:e71323
Choudhary C et al. (2009) Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science 325:834-840
Henderson SE et al. (2016) Suppression of tumor growth and muscle wasting in a transgenic mouse model of pancreatic cancer by the novel histone deacetylase inhibitor AR-42. Neoplasia 18:765-774
Yoshida M et al. (1990) Potent and specific inhibition of mammalian histone deacetylase both in vivo and in vitro trichostatin A. J Biol Chem 265:17174-17179
Gnad F et al. (2011) PHOSIDA 2011: the posttranslational modification database. Nucl Acids Res 39:D253-D260
Allfrey V et al (1964) Acetylation and methylation of histones and their possible role in the regulation of RNA synthesis. Proc Natl Acad Sci 51: 786-794
Pogo B et al (1966) RNA synthesis and histone acetylation during the course of gene activation in lymphocytes. Proc Natl Acad Sci 55: 805-812
Richon VM et al. (2000) Histone deacetylase inhibitor selectively induces p21WAF1 expression and gene-associated histone acetylation. Proc Natl Acad Sci 97:10014-10019
Wu JT et al. (2001) Transient vs prolonged histone hyper acetylation: effects on colon cancer cell growth, differentiation, and apoptosis. Am J Physiol Gastrointest Liver Physiol 280:G482-G490
Gartel AL and Tyner AL (2002) The role of the cyclin-dependent kinase inhibitor p21 in apoptosis. Mol Cancer Ther 1: 639-649
Chen J et al (1996) Cyclin-binding motifs are essential for the function of p21CIP1. Mol Cell Biol 16: 4673-4682
Li L et al. (2012) Downregulation of microRNAs miR-1, -206 and -29 stabilizes PAX3 and CCND2 expression in rhabdomyosarcoma. Lab Invest 92: 571-583
Dong Q et al. (2010) microRNA let-7a inhibits proliferation of human prostate cancer cells in vitro and in vivo by targeting E2F2 and CCND2. PLoS One 5: e10147
Wu R et al. (2016) microRNA-497 induces apoptosis and suppressed proliferation via the Bcl-2/Bax-caspase9-caspase 3 pathway and cyclin D2 protein in HUVECs. PLoS One 11: e0167052
Niu Z et al. (2011) microRNA-21 regulates the self-renewal of mouse spermatogonial stem cells. Proc Natl Acad Sci 108: 12740-12745
de Rooij DG et al. (2001) Proliferation and differentiation of spermatogonial stem cells. Reproduction 121: 347-354
de Rooij DG. (1998) Stem cells in the testis. Int J Exp Path 79: 67-80
Appendix 1
List of MIEs in this AOP
Event: 1502: Histone deacetylase inhibition
Short Name: Histone deacetylase inhibition
AOPs Including This Key Event
AOP ID and Name | Event Type |
---|---|
Aop:212 - Histone deacetylase inhibition leading to testicular toxicity | MolecularInitiatingEvent |
Stressors
Name |
---|
Methoxyacetic acid |
Butyrate |
Trichostatin A |
Biological Context
Level of Biological Organization |
---|
Molecular |
Evidence for Perturbation by Stressor
Overview for Molecular Initiating Event
HDIs are classified according to chemical nature and mode of mechanism: the short chain fatty acids (e.g., butyrate, valproate), hydroxamic acids (e.g., suberoylanilide hydroxamic acid or SAHA, Trichostatin A or TSA), cyclic tetrapeptides (e.g., FK-228), benzamides (e.g., N-acetyldinaline and MS-275) and epoxides (depeudecin, trapoxin A) [Richon VM et al 2004, Ropero S and Esteller M, Villar-Garea et al]. There is a report showing that TSA and butyrate competitively inhibits HDAC activity [Sekhavat A]. HDIs inhibit preferentially HDACs with some selectiveness [Hu E et al]. TSA inhibits HDAC1, HDAC3 and HDAC8, whereas MS-27-275 has inhibitory effect for HDAC1 and HDAC3 (IC50 value of ~0.2 mM and ~8 mM, respectively), but no effect for HDAC8 (IC50 value >10 mM) [Hu E et al]. TSA inhibits HDAC1, 2, 3 of class I HDACs. HDAC 1, 4, 6 are related to tumor size [Damaskos]. MAA (2 or 5 mM) inhibited HDAC activity in dose-response manner in rat testis cytosolic and nuclear extracts [Wade MG 2008].
Domain of Applicability
Name |
Scientific Name | Tissue/Organ or Cell type | Evidence | Reference |
---|---|---|---|---|
Rat | Rattus norvegicus | Brown Norway rat (output: rate of resorption of subretinal blebs) (Desjardins) / Sprague-Dawley rat (Wade) / pc-12 cells (Steffan JS) | Strong |
Desjardins D et al. Wade MG et al 2008 Steffan JS et al. |
Human | Homo sapiens | Human (Ansari) / NSCLC cells (output: cell growth) (Miyanaga) / HeLa cell (Jansen MS, Di Renzo) / ARPE19 cells (Desjardins) | Strong |
Ansari J et al., Miyanaga A et al. Jansen MS et al. 2004 Di Renzo et al. Desjardins D et al. |
Mouse | Mus musculus | Splenocytes (Mishra) / brain, spleen (Hockly) / spleen (Jansen MS) / embyo (Di Renzo) | Strong | Mishra N et al. Hockly E et al. Jansen MS et al. 2004 Di Renzo et al. |
Key Event Description
Site of action: The site of action for the molecular initiating event is the spermatocytes in testis.
The nucleosome consists of core histones having classes of H2A, H2B, H3 and H4) [Damaskos]. DNA strand (about 200 bp) wound around the core histones, where histone deacetylase (HDAC) effects on the lysine residue of the histone to hydrolyze the acetyl residue [Damaskos]. Histone deacetylase inhibitor (HDI) inhibits HDAC and acetylate the histones and release the DNA strand to induce the binding of transcription factors [Taunton et al]. HDIs have potentials as anti-cancer pharmaceuticals since HDIs induce the transcriptional restoration of epigenetically silenced tumor suppressor genes by regulating acetylation of histones and non-histone proteins [Lee et al] [Minucci S].
It is known that 18 HDAC isoforms are classified into four classes: class I HDACs (isoforms 1, 2, 3, 8), class II isoforms (4, 5, 6, 7, 9, 10) and class III HDACs (the sirtuins) and HDAC11 [Weichert, Barneda-Zahonero]. HDACs 1, 2 and 3 are ubiquitously expressed, whereas HDAC8 is predominantly expressed in cells with smooth muscle/myoepithelial differentiation [Weichert]. HDAC6 is not observed to express in lymphocytes, stromal cells and vascular endothelial cells [Weichert]. Class III HDACs sirtuins are widely expressed and localized in different cellular compartments [Barneda-Zahonero]. SirT1 is highly expressed in testis, thymus and multiple types of germ cells [Bell]. HDAC11 expression is enriched in kidney, brain, testis, heart and skeletal muscle [Barneda-Zahonero].
How it is Measured or Detected
The measurement of HDAC inhibition monitors the decrease in histone acetylation. The measurement methods include the immunological detection of histone acetylation with anti-acetylated histone antibodies [Richon VM et al 2004]. The histones are isolated from pellets of cells treated with HDIs, followed by acid-urea-triton gel electrophoresis, western blotting, and immunohistochemistry [Richon VM et al 2004]. Epigenetic modifications including the histone acetylation are measured using chromatin immunoprecipitation-microarray hybridization (ChIP-chip) [ENCODE Project Consortium, Ren B et al]. ChIP detects physical interaction between transcription factors or cofactors and the chromosome [Johnson DS et al].
References
Damaskos C. et al. (2017) Histone deacetylase inhibitors: an attractive therapeutic strategy against breast cancer. Anticancer Research 37: 35-46.
Taunton J. et al. (1996) A mammalian histone deacetylase related to the Yeast transcriptional regulator Rpd3p. Science 272:408-411.
Lee SC. et al. (2016) Essential role of insulin-like growth factor 2 in resistance to histone deacetylase inhibitor. Oncogene 35:5515-5526.
Minucci S, Pelicci PG. (2006) Histone deacetylase inhibitors and the promise of epigenetic (and more) treatments for cancer. Nat Rev Cancer. Jan;6(1):38-51.
Weichert W. (2009) HDAC expression and clinical prognosis in human malignancies. Cancer Letters 280:168-176
Barneda-Zahonero B and Parra M (2012) Histone deacetylases and cancer. Mol Oncol 6:579-589
Bell EL et al. (2014) SirT1 is required in the male germ cell for differentiation and fecundity in mice. Development 141:3495-3504
Richon VM et al. (2004) Histone deacetylase inhibitors: assays to assess effectiveness in vitro and in vivo. Methods Enzymol. 376:199-205
The ENCODE Project Consortium. (2004) The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 306:636-640
Ren B and Dynlacht D. (2004) Use of chromatin immunoprecipitation assays in genome-wide location analysis of mammalian transcription factors. Methods Enzymol. 376:304-315
Johnson DS et al. (2007) Genome-wide mapping of in vivo protein-DNA interactions. Science 316:1497-1502
Desjardins D et al. (2016) Histone deacetylase inhibition restores retinal pigment epithelium function in hyperglycemia. PLoS ONE 11: e0162596
Wade MG et al. (2008) Methoxyacetic acid-induced spermatocyte death is associated with histone hyperacetylation in rats. Biol Reprod 78:822-831
Steffan JS et al. (2001) Histone deacetylase inhibitors arrest polyglutamine-dependent neurodegeneration in Drosophila. Nature 413:739-743
Ansari J et al. (2016) Epigenetics in non-small cell lung cancer: from basics to therapeutics. Transl Lung Cancer Res 5:155-171
Miyanaga A et al. (2008) Antitumor activity of histone deacetylase inhibitors in non-small cell lung cancer cells: development of a molecular predictive model. Mol Cancer Ther 7:1923-1930
Jansen MS et al. (2014) Short-chain fatty acids enhance nuclear receptor activity through mitogen-activated protein kinase activation and histone deacetylase inhibition Proc Natl Acad Sci USA 101:7199-7204
Di Renzo F et al. (2007) Boric acid inhibits embryonic histone deacetylases: A suggested mechanism to explain boric acid-related teratogenicity. Toxicol and Appl Pharmacol 220:178-185
Mishra N et al. (2003) Histone deacetylase inhibitors modulate renal disease in the MRL-lpr/lpr mouse. J Clin Invest 111: 539-552
Hockly E et al. (2003) Suberoylanilide hydroxamic acid, a histone deacetylase inhibitor, ameliorates motor deficits in a mouse model of Huntington’s disease. Proc Nat Acad Sci 100:2041-2046
Ropero S and Esteller M. (2007) The role of histone deacetylases (HDACs) in human cancer. Mol Oncol 1:19-25
Villae-Garea A and Esteller M. (2004) Histone deacetylase inhibitors: understanding a new wave of anticancer agents. Int J Cancer 112:171-178
Sekhavat A et al. (2007) Competitive inhibition of histone deacetylase activity by trichostatin A and butyrate. Biochemistry and Cell Biology 85:751-758
Hu E et al. (2003) Identification of novel isoform-selective inhibitors within class I histone deacetylases. J Pharmacol Exp Ther 307:720-728
Damaskos C et al. (2016) Histone deacetylase inhibitors: a novel therapeutic weapon against medullary thyroid cancer? Anticancer Res 36:5019-5024
List of Key Events in the AOP
Event: 1503: Histone acetylation, increase
Short Name: Histone acetylation, increase
AOPs Including This Key Event
AOP ID and Name | Event Type |
---|---|
Aop:212 - Histone deacetylase inhibition leading to testicular toxicity | KeyEvent |
Biological Context
Level of Biological Organization |
---|
Cellular |
Domain of Applicability
MAA induces acetylation of histones H3 and H4 in Sprague-Dawley (Rattus norvegicus) [Wade MG]. It is also reporeted that MAA promotes acetylation of H4 in HeLa cells (Homo sapiens) and spleens from C57BL/6 mice (Mus musculus) treated with MAA [Jansen]. VPA induces hyperacetylation of histone H4 in protein extract of mouse embryos (Mus musculus) exposed in utero for 1h to VPA [Di Renzo]. Apicidin, MS-275 and sodium butyrate induce hyperacetylation of histone H4 in homogenates from mouse embryos (Mus musculus) after the treatments [Di Renzo]. MAA acetylates histones H3K9 and H4K12 in limbs of CD1 mice (Mus musculus) [Dayan C].
Key Event Description
Gene transcription is regulated with the balance between acetylation and deacetylation. The acetylation and deacetylation are modulated on the NH3+ groups of lysine amino acid residues in histones. DNA in acetylated histones is more accessible for transcription factors, leading to increase in gene expression. HDAC inhibition promotes the hyperacetylation by inhibiting deacetylation of histones with classes of H2A, H2B, H3 and H4 in nucleosomes. [Wade MG 2008].
How it is Measured or Detected
Histone acetylation is measured by the immunological detection of histone acetylation with anti-acetylated histone antibodies [Richon VM et al 2004]. Histone acetylation on chromatin can be measured using labeling method with sodium [3H] acetate [Gunjan A et al].
References
Wade MG et al. (2008) Methoxyacetic acid-induced spermatocyte death is associated with histone hyperacetylation in rats. Biol Reprod 78:822-831
Richon VM et al. (2004) Histone deacetylase inhibitors: assays to assess effectiveness in vitro and in vivo. Methods Enzymol 376:199-205
Gunjan A et al. (2001) Core histone acetylation is regulated by linker histone stoichiometry in vivo. J Biol Chem 276:3635-3640
Jansen MS et al. (2014) Short-chain fatty acids enhance nuclear receptor activity through mitogen-activated protein kinase activation and histone deacetylase inhibition Proc Natl Acad Sci USA 101:7199-7204
Di Renzo F et al. (2007) Boric acid inhibits embryonic histone deacetylases: A suggested mechanism to explain boric acid-related teratogenicity. Toxicol and Appl Pharmacol 220:178-185
Di Renzo F et al. (2007) Relationship between embryonic histonic hyperacetylation and axial skeletal defects in mouse exposed to the three HDAC inhibitors apicidin, MS-275, and sodium butyrate. Toxicol Sci 98:582-588
Dayan C and Hales BF. (2014) Effects of ethylene glycol monomethyl ether and its metabolite, 2-methoxyacetic acid, on organogenesis stage mouse limbs in vitro. Birth Defects Res (Part B) 101:254-261
Event: 1504: p21 expression, increase
Short Name: p21 expression, increase
AOPs Including This Key Event
AOP ID and Name | Event Type |
---|---|
Aop:212 - Histone deacetylase inhibition leading to testicular toxicity | KeyEvent |
Biological Context
Level of Biological Organization |
---|
Cellular |
Domain of Applicability
FK228 up-regulated p21 level in human esophageal cancer TE2 cells (Homo sapiens) [Hoshino I]. MAA induced p21 up-regulation in human prostate cancer cell lines (Homo sapiens) [Parajuli]. MAA increases p21 expression in human bladder carcinoma cells, T24 (Homo sapiens) [Glaser]. MAA up-regulated p21 expression in limbs of CD1 embryonic mice (Mus musculus) [Dayan C].
Key Event Description
p21 (CDKN1A) binds to and inhibits the activity of cyclin-dependent kinase 2 or cyclin-dependent kinase 4 complexes, and regulates cell cycle progression in G1 phase. p21 is important for cell cycle regulation. Acetylation of p21 promoter and p21 mRNA were correlated in valproic acid and analog treatments (Gurvich).
How it is Measured or Detected
The p21 mRNA is measured with real-time RT-PCR technique using primers for p21 [Dayan C]. Gene expression of p21 is measured with microarray technique using gene chips after cDNA preparation from total RNA extracted from the samples [Glaser, Hoshino]. Protein level of p21 is measured with Western blot analysis using anti-p21 antibody [Parajuli, Glaser].
References
Dayan C and Hales BF. (2014) Effects of ethylene glycol monomethyl ether and its metabolite, 2-methoxyacetic acid, on organogenesis stage mouse limbs in vitro. Birth Defects Res (Part B) 101:254-261
Glaser KB et al. (2003) Gene expression profiling of multiple histone deacetylase (HDAC) inhibitors: defining a common gene set produced by HDAC inhibition in T24 and MDA carcinoma cell lines. Mol Cancer Ther 2:151-163
Hoshino I et al. (2007) Gene expression profiling induced by histone deacetylase inhibitor, FK228, in human esophageal squamous cancer cells. Oncol Rep 18:585-592
Parajuli KR et al. (2014) Methoxyacetic acid suppresses prostate cancer cell growth by inducing growth arrest and apoptosis. Am J Clin Exp Urol 2:300-313
Event: 1505: cell cycle disorder
Short Name: cell cycle disorder
AOPs Including This Key Event
AOP ID and Name | Event Type |
---|---|
Aop:212 - Histone deacetylase inhibition leading to testicular toxicity | KeyEvent |
Biological Context
Level of Biological Organization |
---|
Cellular |
Domain of Applicability
MAA blocks G1/S transition in human prostate cancer cell cycles (Homo sapiens) [Parajuli]. The change in the amounts of cells in G1 phase and S phase of cell cycle was detected in mouse HDAC1-/- fibroblast lines (Mus musculus) [Zupkovitz].
Key Event Description
In spermatocytes, the mitosis and meiosis are activated and regulated. The dysregulation of cell cycle effects the spermatogenesis such as numbers. The phosphorylation of p21 regulates its function [Moussa, Child]. The up-regulation of p21 level in iron-chelated cancer cells was observed [Moussa]. G1/S transition blockade was observed in MAA-treated prostate cancer cells [Parajuli]. Valproic acid (VPA), a well-known teratogen, inhibits HDACs, which leads to the teratogenic effect [Gurvich].
How it is Measured or Detected
Cell cycle analysis was performed with cells treated with HDAC inhibitor [Parajuli]. The percentage of cells at G1, G0, S, and G2/M phases was determined by flow cytometry analysis using DNA content frequency histogram deconvolution software [Parajuli, Li Q]. Cell cycle distribution in HDAC1-/- fibroblast lines was also analyzed by fluorescence-activated cell sorter (FACS) analysis with a Partec PAS-II sorter [Zupkovitz]. The four cell cycle phases in living cells can be measured with four-color fluorescent proteins using live cell imaging [Bajar].
References
Moussa RS et al. (2015) Differential targeting of the cyclin-dependent kinase inhibitor, p21CIP/WAF1, by chelators with anti-proliferative activity in a range of tumor cell-types. Oncotarget 6:29694-29711
Child ES and Mann DJ. (2006) The intricacies of p21 phosphorylation. Cell Cycle 5:1313-1319
Parajuli KR et al. (2014) Methoxyacetic acid suppresses prostate cancer cell growth by inducing growth arrest and apoptosis. Am J Clin Exp Urol 2:300-313
Gurvich N et al. (2004) Histone deacetylase is a target of valproic acid-mediated cellular differentiation. Cancer Research 64:1079-1086
Li Q, Lambrechts MJ, Zhang Q, Liu S, Ge D, Yin R, Xi M and You Z. Glyphosate and AMPA inhibit cancer cell growth through inhibiting intracellular glycine synthesis. Drug Des Devel Ther 2013; 7: 635-643.
Zupkovitz G et al. (2010) The cyclin-dependent kinase inhibitor p21 is a crucial target for histone deacetylase 1 as a regulator of cellular proliferation. Mol Cell Biol 30:1171-1181
Bajar BT et al. (2016) Fluorescent indicators for simultaneous reporting of all four cell cycle phases. Nat Methods 13: 993-996
Event: 1262: Apoptosis
Short Name: Apoptosis
Key Event Component
Process | Object | Action |
---|---|---|
apoptotic process | increased |
AOPs Including This Key Event
AOP ID and Name | Event Type |
---|---|
Aop:205 - AOP from chemical insult to cell death | AdverseOutcome |
Aop:207 - NADPH oxidase and P38 MAPK activation leading to reproductive failure in Caenorhabditis elegans | KeyEvent |
Aop:212 - Histone deacetylase inhibition leading to testicular toxicity | KeyEvent |
Biological Context
Level of Biological Organization |
---|
Tissue |
Domain of Applicability
The apoptosis and proliferation inhibition induced by MAA was measured in human prostate cancer cell lines (Homo sapiens) [Parajuli]. The cell viability inhibition induced by SAHA or TSA was observed in NHDFs (Homo sapiens) [Glaser]. The proliferation of the HDAC-/- ES cells was inhibited compared to HDAC+/+ ES cells (Homo sapiens) [Zupkovitz].
Key Event Description
Apoptosis is characterized by DNA ladder and chromatin condensation. Several stimuli such as hypoxia, nucleotides deprivation, chemotherapeutical drugs, DNA damage, and mitotic spindle damage induce p53 activation, leading to p21 activation and cell cycle arrest [Pucci]. MAA (5 mM or 20 mM) decreased BIRC2 protein expression and activated caspases 7 and 3 [Parajuli]. MAA induces apoptotic nucleosome increase and cleaved PARP protein expression [Parajuli]. MAA decreased cell viability of human prostate cancer cell lines [Parajuli]. The SAHA or TSA treatment on neonatal human dermal fibroblasts (NHDFs) for 24 or 72 hrs inhibited proliferation/viability of the cells [Glaser]. The impaired proliferation was observed in HDAC-/- ES cells, which was rescued with the reintroduction of HDAC1 [Zupkovitz].
How it is Measured or Detected
The apoptosis is detected with the expression alteration of procaspases 7 and 3 by Western blotting using antibodies [Parajuli]. The apoptosis is measured with down-regulation of anti-apoptotic gene baculoviral inhibitor of apoptosis protein repeat containing 2 (BIRC2, or cIAP1) [Parajuli]. Apoptotic nucleosomes were detected using Cell Death Detection ELISA kit, which were calculated as absorbance subtraction at 405 nm and 490 [Parajuli]. Cell viability was measured with live cell number changes using the CellTiter-Glo Luminescent Cell Viability Assay [Parajuli]. Cleavage of PARP was detected with Western blotting [Parajuli]. The proliferation/viability of NHDFs was measured with Alamar-Blue [modified 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide] [Glaser]. Proliferation of the HDAC-/- ES cells was determined with crystal violet and measurement of absorbance at 595 nm [Zupkovitz].
References
Pucci B et al. (2000) Cell cycle and apoptosis. Neoplasia 2:291-299
Parajuli KR et al. (2014) Methoxyacetic acid suppresses prostate cancer cell growth by inducing growth arrest and apoptosis. Am J Clin Exp Urol 2:300-313
Glaser KB et al. (2003) Gene expression profiling of multiple histone deacetylase (HDAC) inhibitors: defining a common gene set produced by HDAC inhibition in T24 and MDA carcinoma cell lines. Mol Cancer Ther 2:151-163
Zupkovitz G et al. (2010) The cyclin-dependent kinase inhibitor p21 is a crucial target for histone deacetylase 1 as a regulator of cellular proliferation. Mol Cell Biol 30:1171-1181
List of Adverse Outcomes in this AOP
Event: 1506: spermatocyte depletion, testis atrophy/weight loss (testicular toxicity)
Short Name: testicular toxicity
AOPs Including This Key Event
AOP ID and Name | Event Type |
---|---|
Aop:212 - Histone deacetylase inhibition leading to testicular toxicity | AdverseOutcome |
Biological Context
Level of Biological Organization |
---|
Organ |
Domain of Applicability
It has been reported that mice lacking both Ink4c and Ink4d produced few mature sperm, and the residual spermatozoa had reduced motility and decreased viability (Mus musculus) [Zindy]. The sperm counts in the cauda epidydimis of rats exposed to butylparaben were significantly decreased (Rattus norvegicus) [Oishi S2001]. EGME or MAA treatment induced the testicular damage in rat (Rattus norvegicus) [Foster PMD1983]. EGME were shown to deplete the spermatocytes in CD-1 mice (Mus musculus) and CD rats (Rattus norvegicus), principally pachytene cells, but with other stages affected with increasing dose [Anderson D]. The testicular lesions induced by 2-methoxyethanol were observed in rats (Rattus norvegicus) and guinea pigs (Cavia porcellus), which are different in onset, characteristics and severity [Ku WW]. EGME has effects in disruption of spermatogenesis in rabbits (Oryctolagus cuniculus) [Foote]. Dimethoxyhexane (DMH) induces testicular toxicity such as spermatocyte death in seminiferous tubule stages I-IV and stages XII-XIV and MAA increase in urine in Sprague-Dawley rats (Rattus norvegicus) MAA treatment induces spermatocyte death in Sprague-Dawley rats (Rattus norvegicus) [Wade 2008]. Treatment of TSA resulted in a dose-dependent decrease in relative testis weight due to impaired spermatogenesis in mice, and impaired meiosis [Fenic 2004, 2008].
Key Event Description
Spermatocytes are differentiated from spermatogonial stem cells via random proliferation, differentiation and synchronized mitoses with several stages [Rooij]. Spermatogenesis is controlled by the cyclin D-dependent kinase inhibitors p18Ink4c and p19Ink4d [Zindy]. It is hypothesized that the testicular effects of 1,6-dimethoxyhexane (DMH) are caused by its metabolism to MAA [Wade2006, Poon2004]. MAA produces testicular and thymic atrophy [Miller1982, Moss1985]. The spermatogenic stages in which the toxicity of MAA is induced are on the patchytene spermatocytes immediately before and during meiotic division, which are Stages XII-XIV of the cycle in the rat and the early pachytene spermatocytes at stages I-IV of the cycle. Dead germ cells can be seen as soon as 12 hours after the treatment of MAA [Casarett & Doull’s].
How it is Measured or Detected
The sperm-containing fluid was squeezed out of the cauda, and suspended in medium containing HEPEs buffer and bovine serum albumin, and incubated at 37C for 20 min. The number of spermatozoa was determined by hematocytometer [Zindy]. Testicular sperm counts and daily sperm production were determined by counting the total number of spermatids per testis, and divided by the testicular weight to give the results in spermatids per gram of testis [Oishi S2001]. The weights of testes of MAA-treated rats were measured to detect the testicular atrophy [Foster PMD1983]. Since zinc concentration has been shown to play an important role in the production of testicular injury by compounds, the effects of EGME and MAA on urinary zinc excretion and testicular zinc content was examined [Foster PMD1983]. In detail, the animals were ip injected with 65Zn-Cl2 in saline 2 days before treatment with either EGM or MAA. After the measurement of baseline values of 65Zn urinary excretion, groups of animals were administered with EGME or an equimolar dose of MAA by oral gavage for 4 days and urine samples were collected daily [Foster PMD1983]. Twenty-four hours after the last dose of EGME or MAA, the animals were killed and the 65Zn content in urine and tissues was measured with a Packard 5230 autogamma spectrometer [Foster PMD1983]. Testis were fixed in Bouin’s fluid for light microscopy or diced and fixed in a 4% formaldehyde plus 1% glutaraldehyde solution in 0.1 M phosphate buffer, pH 7.29 for transmission electron microscopy [Foster PMD1983, McDowell and Trump1976]. Changes in sperm were measured by computer-assisted sperm analysis [Foote RH]. For the detection of apoptosis, the testes were fixed in modified Davidson fix for 48 hrs, postfixed for 24 hrs in 10% neutral buffered formalin, and embedded in paraffin. Germ cell death was visualized in testis sections by TUNEL staining [Wade2008]. The incidence of TUNEL-positive cells was expressed as the number of positive cells per tubule examined for one entire testis section per animal [Wade2008]. For the testis cell analysis, fresh testes were dispersed using a two-stage enzymatic digestion and incubated in BSA containing collagenase and DNase I [Wade2006]. The seminiferous tubules were further digested and cells were fixed in ice-cold 70% ethanol [Wade2006]. Relative proportions of spermatogenic cell populations were assessed in fixed cells using a flow cytometeric method [Wade2006]. The principle of the test is that spermatogenic cells, as they differentiate from normal diploid spermatogonial stem cells through to mature spermatozoa with a highly condensed haploid complement of DNA, progress through various intermediate stages with differing nuclear DNA content and cellular content of mitochondria. With the use of fluorescent probes to quantitatively label DNA (PI) and mitochondria (NAO), the relative numbers of cells in each intermediate population can be resolved to determine relatives at each germ cell stage. Cells were analyzed using a FACS Calibur flow cytometer fitted with an argon ion laser (488 nm line excitation); fluorescence emission of NAO was reflected by a 550 dichroic longpass filter and quantified after passage through a 530/30 nm bandpass filter [Wade2006]. Fluorescence of PI was detected after sequential passage through the 550 dichroic filter and a 670-nm longpass filter [Wade2006]. Relative proportions of cells in each population were calculated with WinList software [Wade2006]. The germ cell types in each population were identified under a fluorescent microscope (Zeiss Axioskop 2, Carl Zeiss, Thornwood, NY) by examination of cells from each population, which were isolated using the cell-sorting capacity of the FACS Calibur flow cytometer [Wade2006]. For the assessment of sperm morphology, eosin-stained sperm collected from the cauda epididymis were smeared onto two glass slides per sample, air-dried, and cover-slipped. At least 200 sperm on each slide were examined for the proportion of sperm with abnormal head (overhooked, blunt hook, banana-shaped, amorphous, or extremely oversized) or tail (twisted, bent, corkscrew, double. multiple) by one individual unaware of animal number or treatment [Wade2006]. For the measurement of the total number of condensed spermatids per testis, a weighed portion of the parenchyma from the left testis, as representative of the whole organ as possible, was homogenized in 20 ml of STA solution (0.9% NaCl, 0.01% Triton X-100, and 0.025% sodium azide) [Wade2006]. For the measurement of the total number of sperm in the cauda epididymis, whole cauda and associated sperm suspension in DPBS were thawed on ice and homogenized [Wade2006]. Homogenates of either tissue were then disrupted with a VibraCell sonicator using a microprobe [Wade2006]. Sperm or homogenization-resistant spermatid nuclei densities were calculated from the average number of nuclei in four fields on a Neubaur hemocytometer and were expressed as total or as per gram of epididymis or testis weight [Wade2006]. For the determination of total LDH and LDH-X in supernatant of the homogenized testis fragment, enzyme activity was measured by monitoring extinction of NAD absorbance at 340 nm in a reaction mixture that contained 4.2 mM of NAD in 10.5 mM Tris KCl (pH 9.0) at 30C [Wade2006].
References
Rooij DG. (2001) Proliferation and differentiation of spermatogonial stem cells. Reproduction 121:347-354
Zindy F et al. (2001) Control of spermatogenesis in mice by the cyclin D-dependent kinase inhibitors p18Ink4c and p19Ink4d. Mol Cell Biol 21:3244-3255
Wade MG et al. (2006) Testicular toxicity of candidate fuel additive 1,6-dimethoxyhexane: comparison with several similar aliphatic ethers. Toxicol Sci 89:304-313
Poon R et al. (2004) Short-term oral toxicity of pentyl ether, 1,4-diethoxybutane, and 1,6-dimethoxyhexane in male rats. Toxicol Sci 77:142-150
Miller R et al. (1982) Toxicity of methoxyacetic acid in rats. Fundam Appl Toxicol 2:158-160
Moss EJ et al. (1985) The role of metabolism in 2-methoxyethanol-induced testicular toxicity. Toxicol Appl Pharmacol 79:480-489
Casarett & Doull’s Toxicology, the Basic Science of Poisons, 7th Edition, Edited by Curtis D. Klaassen, Chapter 20 Toxic responses of the reproductive system
Oishi S. (2001) Effects of butylparaben on the male reproductive system in rats. Toxicol Indust Health 17:31-39
Foster PM et al. (1983) Testicular toxicity of ethylene glycol monomethyl and monoethyl ethers in the rats. Toxicol Appl Pharmacol 69:385-399
McDowell EM and Trump BF. (1976) Histologic fixatives suitable for diagnostic light and electron microscopy. Arch Pathol Lab Med 100:405-414
Foote RH et al. (1995) Ethylene glycol monomethyl ether effects on health and reproduction in male rabbits. Reprod Toxicol 9:527-539
Wade MG et al. (2008) Methoxyacetic acid-induced spermatocyte death is associated with histone hyperacetylation in rats. Biol Reprod 78:822-831
Anderson D et al. (1987) Effect of ethylene glycol monomethyl ether on spermatogenesis, dominant lethality, and F1 abnormalities in the rat and the mouse after treatment of F0 males. Teratog Carcinog Mutagen 7:141-158
Ku WW et al. (1994) Comparison of the testicular effects of 2-methoxyethanol (ME) in rats and guinea pigs. Exp Mol Pathol 61:119-133
Fenic I et al. (2008) In vivo application of histone deacetylase inhibitor trichostatin-A impairs murine male meiosis. J Androl 29: 172-185
Fenic I et al. (2004) In vivo effects of histone-deacetylase inhibitor trichostatin-A on murine spermatogenesiss. J Androl 25: 811-818
Appendix 2
List of Key Event Relationships in the AOP
List of Adjacent Key Event Relationships
Relationship: 1709: Histone deacetylase inhibition leads to Histone acetylation, increase
AOPs Referencing Relationship
AOP Name | Adjacency | Weight of Evidence | Quantitative Understanding |
---|---|---|---|
Histone deacetylase inhibition leading to testicular toxicity | adjacent | High | High |
Evidence Supporting Applicability of this Relationship
Hyperacetylation by HDIs such as SAHA and Cpd-60 are observed in mouse (Schroeder et al). TSA induces acetylation of histone H4 in time-dependent manner in mouse cell lines (Alberts et al). AR-42, a novel HDI, induces hyperacetylation in human pancreatic cancer cells (Henderson et al.). SAHA and MS-275 hyperacetylates lysine of histones in human cell lines of epithelial (A549) and lymphoid origin (Jurkat) (Choudhary et al.). HDAC inhibitors, phenylbutyrate (PB) (2 mM) and TSA (200 nM) acetylate histones H3 and H4 in synovial cells from rats with adjuvant arthritis (Chung et al 2003). SAHA treatment induces the H3 and H4 histone acetylation in human corneal fibroblasts and conjunctiva from rabbits after glaucoma filtration surgery (Sharma A 2016). TSA induces the acetylation of histones H3 and H4 in Brassica napus microspore cultures (Li H et al 2014).
The inhibition of HDAC by HDIs is well conserved between species from lower organism to mammals [Richon VM 2004, Steffan JS et al, Desjardins D et al, Ansari J et al, Miyanaga A et al, Mishra N et al, Hockly E et al.] HDIs reduced lethality in Drosophila model and the HDAC activity was inhibited with HDIs in rat PC12 cells [Steffan JS]. HDIs inhibited restores the rate of resorption of subretinal blebs in hyper glycemia in brown Norway rat and HDAC activity was inhibited with HDIs in human ARPE19 cells [Desjardins D et al]. HDIs were approved as drugs for multiple myeloma and T-cell lymphoma by FDA [Ansari]. HDIs inhibited cell growth in human non-small cell lung cancer cell lines [Miyanaga]. HDAC acetylation level was increased by HDIs in MRL-lpr/lpr murine model of lupus splenocytes [Mishra]. SAHA increased histone acetylation in brain and spleen of mice [Hockly]. MAA inhibits HDAC activity in HeLa cells and spleens from C57BL/6 mice [Jansen MS 2004]. It is also reported that MAA inhibits HDAC activity in testis cytosolic and nuclear extract of juvenile rats (27 days old) [Wade MG 2008]. VPA and TSA inhibit HDAC enzymatic activity in mouse embryo and human HeLa cell nuclear extract [Di Renzo].
Key Event Relationship Description
The gene transcription is regulated with the balance of acetylation. The histone acetylation leads to the gene transcription increase, whereas the deacetylation leads to the gene silencing in general. The HDAC inhibitors (HDIs) inhibit deacetylation of the histone, leading to the increase in histone acetylation and gene transcription. HDACs deacetylate acetylated histone in epigenetic regulation (Falkenberg 2014). HDAC inhibition by HDIs leads to hyperacetylation of histone and a large number of cellular proteins (Falkenberg 2014). Histone hyperacetylation by HDIs leads to transcriptional activation of genes (Falkenberg 2014). Measured properties of 20 valproic acid derivatives show that concentration of half-maximum inhibitory effect (IC50) in the HDAC enzyme inhibition correlates with teratogenic potential, and HDAC inhibitory derivatives show hyperacetylation of core histone 4 in treated F9 cells (Eikel 2006).
Evidence Supporting this KER
Biological PlausibilityHDACs are important proteins in epigenetic regulation of gene transcription. Upon the inhibition of HDAC by HDIs, the acetylation of lysine in histone remains and it leads to transcriptional activation or repression, changes in DNA replication and DNA damage repair. It is likely that the post-translational modifications such as acetylation, phosphorylation and methylation regulates biological function, which suggests that the hyperacetylation induced by HDAC inhibition by HDIs leads to the regulation of gene transcription.
Empirical EvidenceHDIs increase histone acetylation in brain (Schroeder FA). The HDI selectivity exists, in which SAHA is a more potent inducer of histone acetylation than MS-275, and more acetylation sites on the histones H3 and H4 are responsible to SAHA than MS-275 (Choudhary 2009). HDI AR-42 induces acetylation of histone H3 in dose-response manner in human pancreatic cancer cell lines (Henderson 2016). HDAC1 and HDAC3 activity are inhibited by m-carboxycinnamic acid bishydroxamide (CBHA) and suberoylanilide hydroxamic acid (SAHA) [Richon VM et al]. SAHA, inhibiting HDACs, leads to cause growth arrest, differentiation, and/or apoptosis of tumor, and it up-regulates thioredoxin-binding protein-2, whereas it down-regulates thioredoxin [Butler LM et al]. HDAC regulates gene expression of the regulators by deacetylating lysine residues of the transcription factors [Freiman RN and Tjian R]. HDAC activity is related to gene silencing, whereas histone acetyl transferase (HAT) induces histone acetylation leading to gene transcription [Ropero S and Esteller M]. MAA treatment in rats induced histone hyperacetylation in histones H3 and H4 [Wade MG]. MAA-induced spermatocyte death is associated with histone acetylation increase [Wade 2008]. The histone deacetylase (HDAC) inhibition induced by valproic acid (VPA) leads to histone hyperacetylation, followed by teratogenic toxicity [Eikel 2006]. Hyperacetylation of histone H3 in HDAC1-deficient ES cells was associated with proximal p21 promoter, while the distal promoter region was not shown to be associated [Lagger].
Uncertainties and InconsistenciesHDACs affect a large number of cellular proteins including histones, which reminds us the HDAC inhibition by HDIs hyperacetylates cellular proteins other than histones and exhibit biological effects. It is also noted that HDAC functions as the catalytic subunits of large protein complex, which suggests that the inhibition of HDAC by HDIs affect the function of the large multiprotein complexes of HDAC (Falkenberg 2014).
References
Falkenberg KJ and Johnstone RW. (2014) Histone deacetylases and their inhibitors in cancer, neurological disease and immune disorders. Nat Rev Drug Discov 13:673-691
Eikel D et al. (2006) Teratogenic effects mediated by inhibition of histone deacetylases: evidence from quantitative structure activity relationships of 20 valproic acid derivatives. Chem Res Toxicol 19:272-278
Schroeder FA et al. (2013) A selective HDAC 1/2 inhibitor modulates chromatin and gene expression in brain and alters mouse behavior in two mood-related tests. PLoS One 8:e71323
Choudhary C et al. (2009) Lysine acetylation targets protein complexes and co-regulates major cellular functions. Science 325:834-840
Henderson SE et al. (2016) Suppression of tumor growth and muscle wasting in a transgenic mouse model of pancreatic cancer by the novel histone deacetylase inhibitor AR-42. Neoplasia 18:765-774
Richon VM. et al. (1998) A class of hybrid polar inducers of transformed cell differentiation inhibits histone deacetylases. Proc Natl Acad Sci USA 95:3003-3007.
Butler LM et al. (2002) The histone deacetylase inhibitor SAHA arrests cancer cell growth, up-regulates thioredoxin-binding protein-2, and down-regulates thioredoxin, Proc Natl Acad Sci USA 99:11700-11705
Freiman RN and Tjian R. (2003) Regulating the regulators: lysine modifications make their mark. Cell 112:11-17
Ropero S and Esteller M. (2007) The role of histone deacetylases (HDACs) in human cancer. Mol Oncol 1:19-25
Wade MG et al. (2008) Methoxyacetic acid-induced spermatocyte death is associated with histone hyperacetylation in rats. Biol Reprod 78:822-831
Lagger G et al. (2002) Essential function of histone deacetylase 1 in proliferation control and CDK inhibitor repression. EMBO J 21:2672-2681
Yoshida M et al. (1990) Potent and specific inhibition of mammalian histone deacetylase both in vivo and in vitro trichostatin A. J Biol Chem 265:17174-17179
Gnad F et al. (2011) PHOSIDA 2011: the posttranslational modification database. Nucl Acids Res 39:D253-D260
Alberts AS et al. (1998) Activation of SRF-regulated chromosomal templates by Rho-family GTPases requires a signal that also induces H4 hyperacetylation. Cell 92:475-487
Chung YL et al. (2003) A therapeutic strategy uses histone deacetylase inhibitors to modulate the expression of genes involved in the pathogenesis of rheumatoid arthritis. Mol Ther 8:707-717
Sharma A et al. (2016) Epigenetic modification prevents excessive wound healing and scar formation after glaucoma filtration surgery. Invest Ophthalmol Vis Sci 57:3381-3389
Li H et al. (2014) The histone deacetylase inhibitor trichostatin A promotes totipotentcy in the male gametophyte. Plant Cell 26:195-209
Richon VM et al. (2004) Histone deacetylase inhibitors: assays to assess effectiveness in vitro and in vivo. Methods Enzymol. 376:199-205
Steffan JS et al. (2001) Histone deacetylase inhibitors arrest polyglutamine-dependent neurodegeneration in Drosophila. Nature 413:739-743
Desjardins D et al. (2016) Histone deacetylase inhibition restores retinal pigment epithelium function in hyperglycemia. PLoS ONE 11: e0162596
Ansari J et al. (2016) Epigenetics in non-small cell lung cancer: from basics to therapeutics. Transl Lung Cancer Res 5:155-171
Miyanaga A et al. (2008) Antitumor activity of histone deacetylase inhibitors in non-small cell lung cancer cells: development of a molecular predictive model. Mol Cancer Ther 7:1923-1930
Mishra N et al. (2003) Histone deacetylase inhibitors modulate renal disease in the MRL-lpr/lpr mouse. J Clin Invest 111: 539-552
Hockly E et al. (2003) Suberoylanilide hydroxamic acid, a histone deacetylase inhibitor, ameliorates motor deficits in a mouse model of Huntington’s disease. Proc Nat Acad Sci 100:2041-2046
Jansen MS et al. (2014) Short-chain fatty acids enhance nuclear receptor activity through mitogen-activated protein kinase activation and histone deacetylase inhibition Proc Natl Acad Sci USA 101:7199-7204
Di Renzo F et al. (2007) Boric acid inhibits embryonic histone deacetylases: A suggested mechanism to explain boric acid-related teratogenicity. Toxicol and Appl Pharmacol 220:178-185
Relationship: 1710: Histone acetylation, increase leads to p21 expression, increase
AOPs Referencing Relationship
AOP Name | Adjacency | Weight of Evidence | Quantitative Understanding |
---|---|---|---|
Histone deacetylase inhibition leading to testicular toxicity | adjacent | Moderate | Moderate |
Evidence Supporting Applicability of this Relationship
TSA and sodium butyrate induced p21 mRNA expression in HT-29 human colon carcinoma cells (Homo sapiens) (Wu JT). Scriptaid, a HDI, up-regulated p21 mRNA expression in mouse embryonic kidney cells (Mus musculus) (Chen S).
Key Event Relationship Description
Upon histone acetylation increase, p21 transcription and protein level are increased. Acetylation of p21 promoter and p21 mRNA level have a close correlation (Gurvich N). Transient histone hyperacetylation was sufficient for the activation of p21 (Wu JT). TSA (0.3 mM) induced p21 mRNA expression in 1 hr, whereas the induction is repressed in 24 hrs after stimulation (Wu JT). On the other hand, butyrate and repetitive doses of TSA induced p21 mRNA expression in 24 hrs (Wu JT). Histone hyperacetylating agents butyrate and TSA induced p21 mRNA expression (Archer SY). HDAC1 overexpression blocked the induction of p21 by butyrate and TSA, indicating that the p21 induction is mediated by histone hyperacetylation (Archer SY). SAHA induced the accumulation of acetylated histones in the chromatin of the p21WAF1 gene and this increase was associated with an increase in p21WAF1 expression (Richon VM2000).
Evidence Supporting this KER
Biological PlausibilityHDIs induce histone hyperacetylation and p21 activation leading to the cell cycle arrest, which suggests the close correlation between histone hyperacetylation and p21. In the models proposed for the relationship between histone acetylation and transcription, histone acetylation can be untargeted and occur at both promoter and nonpromoter regions, targeted generally to promoter regions, or targeted to specific promoters by gene-specific activator proteins (Richon2000 et al, Struhl K). Since several results supported a model in which increased histone acetylation is targeted to specific genes and occurs throughout the entire gene, not just the promoter regions, histone acetylation may leads to gene transcription of p21 (Richon2000).
Empirical EvidenceHDIs induce p53-independent expression of p21 via Sp1 binding sites in the p21 promoter (Gartel). MAA up-regulates p21 (cyclin dependent kinase inhibitor 1A; CDKN1A) gene expression in limbs of CD1 mice [Dayan C]. Considering that acetylation of p53 at K379 requires for p53 binding at the p21 promoter region, p53K379 acetylation and induction of p21 expression seemed correlated [Dayan C]. However, MAA did not increased p53, p63 and p73 level in PC-3, although MAA (5 or 20 mM) induces p21 mRNA level in prostate cancer cells including PC-3, which indicates that MAA-mediated p21 enhancement is independent of p53/p63/p73 [Parajuli]. On the other hand, MAA induced histone acetylation of H4 in prostate cancer cells including LNCaP, C4-2B, PC-3 and DU-145 parallel with p21 mRNA level increase, which suggests that MAA-mediated p21 transcription increases are correlated with HDAC inhibition [Parajuli]. HDIs such as SAHA, TSA and MS-275 up-regulates p21 gene expression in T24 bladder carcinoma cells, which also suggests that HDAC inhibition leads to p21 up-regulation [Glaser]. Cyclin-dependent kinase (CDK) inhibitors p21 and p27 are up-regulated in HDAC1-deficient embryonic stem (ES) cells [Lagger]. In HDAC1-/- mouse embryonic fibroblasts, p21 level increase is observed, which indicates that HDAC suppression leads to p21 up-regulation [Zupkovitz]. Moreover, the increased acetylation of histones H3 and H4 at both proximal and distant promoter regions of p21 was observed in HDAC1-/- mouse embryonic fibroblasts, suggesting that p21 increase is mediated by the loss of HDAC1 [Zupkovitz]. MAA inhibits HDAC1, HDAC2, and HDAC3 to increase the levels of acetylated histone H4 [Parajuli KR, Jansen MS]. Loss of HDAC1 in ES cells decreased proliferation and cyclin A- and cyclin E-associated kinase activity in the HDAC1 mutant cells [Lagger]. HDIs accumulated acetylation of histones and induced p21 protein and mRNA expression (Richon2000 et al, Wu et al). Hyperacetylation of histone H3 in HDAC1-deficient ES cells was associated with proximal p21 promoter, while the distal promoter region was not shown to be associated [Lagger].
Uncertainties and InconsistenciesThere are several pathways to activate p21 promoter by HDI. A HDI, apicidin, induced p21WAF1/Cip1 mRNA independent of the de novo protein synthesis and activated the p21WAF1/Cip1 promoter through Sp1 sites (Han2001). Pretreatment with selective PKC inhibitors calphostin A and rottlerin suppressed the promoter activity of p21WAF1/Cip1 activated by apicidin (Han2001). Furthermore, apicidin-induced translocation of PKCe from cytosolic to particulate fraction was reversed by pretreatment with calphostin C, which suggests the PKCe involvement in apicidin-induced p21WAF1/Cip1 transcription (Han2001). The p21 promoter activation through Sp1 sites induced by apicidin is thought to be independent of histone hyperacetylation (Han2001). The apicidin is suggested to histone hyperacetylation leading to the antiproliferative activity (Han2000). These results indicate the inconclusive discussion in the linkage between histone acetylation and p21 activation.
References
Gurvich N et al. (2004) Histone deacetylase is a target of valproic acid-mediated cellular differentiation. Cancer Res 64:1079-1086
Wu JT et al. (2001) Transient vs prolonged histone hyper acetylation: effects on colon cancer cell growth, differentiation, and apoptosis. Am J Physiol Gastrointest Liver Physiol 280:G482-G490
Archer SY et al. (1998) p21WAF1 is required for butyrate-mediated growth inhibition of human colon cancer cells. Proc Natl Acad Sci USA 95:6791-6796
Richon VM et al. (2000) Histone deacetylase inhibitor selectively induces p21WAF1 expression and gene-associated histone acetylation. Proc Natl Acad Sci 97:10014-10019
Struhl K. (1998) Histone acetylation and transcriptional regulatory mechanisms. Gene Dev 12:599-606
Gartel AL and Tyner AL (2002) The role of the cyclin-dependent kinase inhibitor p21 in apoptosis. Mol Cancer Ther 1: 639-649
Dayan C and Hales BF. (2014) Effects of ethylene glycol monomethyl ether and its metabolite, 2-methoxyacetic acid, on organogenesis stage mouse limbs in vitro. Birth Defects Res (Part B) 101:254-261
Parajuli KR et al. (2014) Methoxyacetic acid suppresses prostate cancer cell growth by inducing growth arrest and apoptosis. Am J Clin Exp Urol 2:300-313
Glaser KB et al. (2003) Gene expression profiling of multiple histone deacetylase (HDAC) inhibitors: defining a common gene set produced by HDAC inhibition in T24 and MDA carcinoma cell lines. Mol Cancer Ther 2:151-163
Lagger G et al. (2002) Essential function of histone deacetylase 1 in proliferation control and CDK inhibitor repression. EMBO J 21:2672-2681
Zupkovitz G et al. (2010) The cyclin-dependent kinase inhibitor p21 is a crucial target for histone deacetylase 1 as a regulator of cellular proliferation. Mol Cell Biol 30:1171-1181
Jansen MS et al. (2014) Short-chain fatty acids enhance nuclear receptor activity through mitogen-activated protein kinase activation and histone deacetylase inhibition Proc Natl Acad Sci USA 101:7199-7204
Wu JT et al. (2001) Transient vs prolonged histone hyper acetylation: effects on colon cancer cell growth, differentiation, and apoptosis. Am J Physiol Gastrointest Liver Physiol 280:G482-G490
Han JW et al. (2001) Activation of p21WAF1/Cip1 transcription through Sp1 sites by histone deacetylase inhibitor apicidin: involvement of protein kinase C. J Biol Chem 276:42084-42090
Han JW et al. (2000) Apidin, a histone deacetylase inhibitor, inhibits proliferation of tumor cells via induction of p21WAF1/Cip1 and gelsolin. Cancer Res 60:6068-6074
Wade MG et al. (2008) Methoxyacetic acid-induced spermatocyte death is associated with histone hyperacetylation in rats. Biol Reprod 78:822-831
Chen S et al (2011) Histone deacetylase (HDAC) activity for embryonic kidney gene expression, growth, and differentiation. J Biol Chem 286: 32775-32789
Relationship: 1711: p21 expression, increase leads to cell cycle disorder
AOPs Referencing Relationship
AOP Name | Adjacency | Weight of Evidence | Quantitative Understanding |
---|---|---|---|
Histone deacetylase inhibition leading to testicular toxicity | adjacent | High | Moderate |
Evidence Supporting Applicability of this Relationship
DNA replication in Xenopus was suppressed by the GST fusion protein of p21 without amino acids 17-24 or the peptide containing cyclin binding site in N-terminus of p21 protein (Chen). P21 regulates the E2F transcriptional activity to control cell cycle in human U2OS osteosarcoma cells (Homo sapiens) (Delavaine L and La Thangue NB). Cell cycle is regulated by p21 through cyclins and CDKs in mice (Mus musculus) (Sherr CJ and Roberts JM).
Key Event Relationship Description
Cell cycle regulation through p21 activation is demonstrated by the interactions of p21 with cyclins (Dotto). P21 interacts directly with cyclins through a conserved region in close to its N-terminus (amino acids 17-24; Cy1) (Dotto). P21 has second weak cyclin binding domain near its C-terminus region (amino acids 153-159), which overlaps with its PCNA binding domain (Dotto). P21 has a separate cyclin-dependent kinase 2 (CDK2) binding site in its N-terminus region (amino acids 53-58) and optimal cyclin/CDK inhibition requires binding by this site as well as one of the cyclin binding sites (Dotto). Kinase activity of cyclin-Cdk kinase was inhibited by Cy1 site of p21 that is important for the interaction of p21 with cyclin-Cdk complexes (Chen). The peptide containing Cy1 site inhibited the kinase activity of cyclin E-Cdk2 and cyclin A-Cdk2 (Chen). The p21WAF1/CIP1/sdi1 gene product inhibits the cyclin D/cdk4/6 and the cyclin E/cdk2 complexes in response to DNA-damage, resulting in G1/S arrest [Moussa, Ogryzko]. P21 inhibits cyclin-dependent kinases and regulates cell cycle to promote cell cycle arrest.
Evidence Supporting this KER
Biological PlausibilityThe study using the p21 deficient lungs showed that p21 is essential for the survival under hyperoxia and protects the lung from oxidative stress (O’Reilly). Hyperoxia inhibits DNA replication through p21 and histone H3 expression (O’Reilly). Hyperoxia decreased proliferation in p21 wild-type lungs but not in p21-deficient mice, which suggests that p21 is crucial for cell cycle regulation (O’Reilly).
Empirical EvidenceTSA induces p21 expression leading to cell cycle arrest (Gartel). Butyrate induced p21 and apoptosis in human colon tumor cell lines, whereas the absence of p21 increased the apoptosis in HCT116 colon carcinoma cell line, which indicates that p21 has a repressive effect for butyrate-induced apoptosis and protects the cells from butyrate-induced cell death (Gartel). SAHA induced p53-independent p21 expression and apoptosis in myelomonocytic leukemia cells (Gartel). The SAHA-related lethality was increased by anti-sense p21, which indicates a protective role of p21 against SAHA-induced apoptosis (Gartel).
Uncertainties and InconsistenciesThe up-regulation of p21 signaling and in testicular germ cells was observed in diabetes (Kilarkaje N). The dual roles of p21 in cell cycle arrest and antiapoptotic effect in the testicular germ cells of diabetic rats are suggested (Kilarkaje N). TSA promotes apoptosis via HDAC inhibition and p53 signaling pathway activation [Deng Z et al]. It is suggested that furazolidone induces reactive oxygen species leading to suppression of p-AKT and p21, and induction of apoptosis (Deng). The anti-apoptotic effect of p21 is mediated by caspase-3 inhibition, which demonstrates the possibility of cell-cycle independent effect on apoptosis (Deng). A study investing the effects of miR-6734 that has a sequence homology with a specific region of p21WAF1/CIP1 promoter on HCT-116 colon cancer cell growth indicated that miR-6734 up-regulated p21 gene expression and induced cell cycle arrest (Kang). This result suggests that the direct enhancement of p21 gene expression is related to the alteration of the cell cycle distribution (Kang). It has been demonstrated that p21 induces apoptosis in human cervical cancer cell lines (Tsao), whereas p21 is implicated in apoptosis inhibition by blocking activation of caspase-3 or interacting with ASK1 (Gartel AL, Zhang J). The study of postnatal telomere indicated that dysfunction of premature telomere induces cell-cycle arrest through p21 activation in mammalian cardiomyocytes (Aix). The proposed model showed that telomere inactivation showed reduced regenerative capacity by p21 activation and cell cycle arrest (Aix). Up-regulation of p21 is implicated in the activation of DNA damage pathways, and deletion of p21 improved stem cell function and lifespan without accelerating chromosomal instability, which indicates that p21-dependent checkpoint induction affects the longevity limit (Choudhury AR). The p21WAF1/CIP1/sdi1 gene product inhibits the cyclin D/cdk4/6 and the cyclin E/cdk2 complexes in response to DNA-damage, resulting in G1/S arrest [Moussa, Ogryzko]. G1/S transition blockade was observed in MAA-treated prostate cancer cells [Parajuli].
References
Dotto GP (2000) p21WAF1/Cip1: more than a break to the cell cycle? Biochim Biophys Acta 1471: M43-M56
Chen J et al (1996) Cyclin-binding motifs are essential for the function of p21CIP1. Mol Cell Biol 16: 4673-4682
Moussa RS et al. (2015) Differential targeting of the cyclin-dependent kinase inhibitor, p21CIP/WAF1, by chelators with anti-proliferative activity in a range of tumor cell-types. Oncotarget 6:29694-29711
Ogryzko VV et al. (1997) WAF1 retards S-phase progression primarily by inhibition of cyclin-dependent kinases. Mol Cell Biol 17:4877-4882
O’Reilly MA et al (2001) The cyclin-dependent kinase inhibitor p21 protects the lung from oxidative stress. Am J Respir Cell Mol Biol 24: 703-710
Gartel AL and Tyner AL (2002) The role of the cyclin-dependent kinase inhibitor p21 in apoptosis. Mol Cancer Ther 1: 639-649
Kilarkaje N and Al-Bader MM. (2015) Diabetes-Induced Oxidative DNA Damage Alters p53-p21CIP1/Waf1 Signaling in the Rat Testis. Reproductive Sciences 22: 102–112
Deng Z et al. (2016) Histone deacetylase inhibitor trichostatin A promotes the apoptosis of osteosarcoma cells through p53 signaling pathway activation. Int J Biol Sci 12:1298-1308
Deng S et al (2016) P21Waf1/Cip1 plays a critical role in furazolidone-induced apoptosis in HepG2 cells through influencing the caspase-3 activation and ROS generation. Food Chem Toxicol 88: 1-12
Kang MR et al (2016) miR-6734 up-regulates p21 gene expression and induces cell cycle arrest and apoptosis in colon cancer cells. PLoS One 11: e0160961
Tsao YP et al (1999) Adenovirus-mediated p21WAF1/SDII/CIP1 gene transfer induces apoptosis of human cervical cancer cell lines. J Virology 73: 4983-4990
Zhan J et al (2007) Negative regulation of ASK1 by p21Cip1 involves a small domain that includes serine 98 that is phosphorylated by ASK1 in vivo. Mol Cell Biol 27: 3530-3541
Aix E et al (2016) Postnatal telomere dysfunction induces cardiomyocyte cell-cycle arrest through p21 activation. J Cell Biol 213: 571-583
Choudhury AR et al (2007) Cdkn1a deletion improves stem cell function and lifespan of mice with dysfunctional telomeres without accelerating cancer formation. Nat Genet 39: 99-105
Parajuli KR et al. (2014) Methoxyacetic acid suppresses prostate cancer cell growth by inducing growth arrest and apoptosis. Am J Clin Exp Urol 2:300-313
Delavaine L and La Thangue NB (1999) Control of E2F activity by p21Waf1/Cip1. Oncogene 18: 5381-5392
Sherr CJ and Roberts JM (2004) Living with or without cyclins and cyclin-dependent kinases. Gene Dev 18: 2699-2711
Relationship: 1712: cell cycle disorder leads to Apoptosis
AOPs Referencing Relationship
AOP Name | Adjacency | Weight of Evidence | Quantitative Understanding |
---|---|---|---|
Histone deacetylase inhibition leading to testicular toxicity | adjacent | High | Moderate |
Evidence Supporting Applicability of this Relationship
MicroRNA let-7a induced cell cycle arrest, inhibited CCND2 and proliferation of human prostate cancer cells (Homo sapiens) (Dong Q). microRNA-497 down-regulated CCND2 and induced apoptosis via the Bcl-2/Bax-caspase 9- caspase 3 pathway in HUVECs (Homo sapiens) (Wu R). micoRNA-26a regulated p53-mediated apoptosis and CCND2 and CCNE2 in mouse hepatocyte (Mus musculus) (Zhou J).
Key Event Relationship Description
SEE BIOLOGICAL PLAUSIBILITY
Evidence Supporting this KER
Biological PlausibilityApoptosis, also called as “physiological cell death”, is involved in cell turnover, physiological involution and atrophy of various tissues and organs (Kerr JFR). The formation of apoptotic bodies involves marked condensation of both nucleus and cytoplasm, nuclear fragmentation, and separation of protuberances (Kerr JFR). The incidence of apoptosis was increased in vincristine-treated cells, in which metaphases were arrested, compared to untreated cells, which indicates that cell cycle dysregulation leads to apoptosis (Sarraf CE). Cell cycles characterized by the DNA content changes regulate cell death and cell proliferation (Lynch MP). Cell gain and loss are balanced with mitosis and apoptosis (Cree). Apoptosis is mediated by caspase activation (Porter AG). Caspase-3 is activated in the programmed cell death, and the pathways to caspase-3 activation include caspase-9 and mitochondrial cytochrome c release (Porter AG). The activation of caspase-3 leads to apoptotic chromatin condensation and DNA fragmentation (Porter AG). Sinularin, a marine natural compound, exhibited DNA damage and induced G2/M cell cycle arrest, followed by apoptosis in human hepatocellular carcinoma HepG2 cells (Chung TW). Sinularin induced caspases 8, 9, and 3, and pro-apoptotic protein Bax, whereas it decrease the anti-apoptotic Bcl-2 protein expression level (Chung TW). The p21CIP1/Waf1 induces cell cycle arrest, whereas the up-regulation of p21 signaling in testicular germ cell cytoplasm is suggested to promote antiapoptotic effect for DNA damage-induced cell death in diabetes (Kilarkaje N). microRNA-497, potentially targeting Bcl2 and Cyclin D2 (CCND2), induced apoptosis via the Bcl-2/Bax - caspase 9 - caspase 3 pathway and CCND2 protein in human umbilical vein endothelial cells (HUVECs) (Wu R). The microRNA-497 activated caspases 9 and 3, and decreased Bcl2 and CCND2 (Wu R). CCND2 is an important cell cycle gene that induces G1 arrest (Li L), and deregulated CCND2 is implicated in cell proliferation inhibition (Wu R, Mermelstein A, Dong Q).
Empirical EvidenceCell cycle arrest such as G1 arrest and G1/S arrest are observed in apoptosis (Li L, Dong Q). microRNA-1 and microRNA-206 represses CCND2, while microRNA-29 represses CCND2 and induces G1 arrest and apoptosis in rhabdomyosarcoma (Li L). The treatment with MAA in prostate cancer cells induced growth arrest and apoptosis [Parajuli].
Uncertainties and InconsistenciesmicroRNA-497 induce activation of caspase-9 and -3, followed by apoptosis, however, the caspase-9 and -3 protein levels were repressed by the ectopic expression of microRNA-497, which remains uncertain (Wu R).
References
Kerr JFR et al. (1972) Apoptosis: a basic biological phenomenon with wide-ranging implications in tissue kinetics. Br J Cancer 26: 239-257
Sarraf CE and Bowen ID (1986) Kinetic studies on a murine sarcoma and an analysis of apoptosis. Br J Cancer 54: 989-998
Lynch MP et al. (1986) Evidence for soluble factors regulating cell death and cell proliferation in primary cultures of rabbit endometrial cells grown on collagen. Proc Natl Acad Sci USA 83: 4784-4788
Cree IA et al. (1987) Cell death in granulomata: the role of apoptosis J Clin Pathol 40: 1314-1319
Porter AG and Janicke RU. (1999) Emerging roles of caspase-3 in apoptosis. Cell Death Differ 6: 99-104
Chung TW et al. (2017) Sinularin induces DNA damage, G2/M phase arrest, and apoptosis in human hepatocellular carcinoma cells. BMC Complement Altern Med 17: 62
Kilarkaje N and Al-Bader MM. (2015) Diabetes-Induced Oxidative DNA Damage Alters p53-p21CIP1/Waf1 Signaling in the Rat Testis. Reproductive Sciences 22: 102–112
Wu R et al. (2016) microRNA-497 induces apoptosis and suppressed proliferation via the Bcl-2/Bax-caspase9-caspase 3 pathway and cyclin D2 protein in HUVECs. PLoS One 11: e0167052
Li L et al. (2012) Downregulation of microRNAs miR-1, -206 and -29 stabilizes PAX3 and CCND2 expression in rhabdomyosarcoma. Lab Invest 92: 571-583
Mermelshtein A et al. (2005) Expression of F-type cyclins in colon cancer and in cell lines from colon carcinomas. Br J Cancer 93: 338-345
Dong Q et al. (2010) microRNA let-7a inhibits proliferation of human prostate cancer cells in vitro and in vivo by targeting E2F2 and CCND2. PLoS One 5: e10147
Parajuli KR et al. (2014) Methoxyacetic acid suppresses prostate cancer cell growth by inducing growth arrest and apoptosis. Am J Clin Exp Urol 2:300-313
Zhou J et al. (2016) miR-26a regulates mouse hepatocyte proliferation via directly targeting the 3’ untranslated region of CCND2 and CCNE2. Hepatobiliary Pancreat Dis Int 15: 65-72
Relationship: 1713: Apoptosis leads to testicular toxicity
AOPs Referencing Relationship
AOP Name | Adjacency | Weight of Evidence | Quantitative Understanding |
---|---|---|---|
Histone deacetylase inhibition leading to testicular toxicity | adjacent | High | Moderate |
Evidence Supporting Applicability of this Relationship
Spermatogenesis was inhibited by knockdown of Sucla2 via apoptosis in the mouse spermatocyte (Mus musculus) (Huang). The suppression of microRNA-21 led to apoptosis of spermatogonial stem cell-enriched germ cell cultures and the decrease in the number of spermatogonial stem cells in mice (Mus musculus) (Niu Z et al).
Key Event Relationship Description
In the mouse spermatocyte, spermatogenesis was inhibited by knockdown of Sucla2 via apoptosis (Huang). CD147 was reported to regulate apoptosis in mouse testis and spermatocyte cell line (GC-2 cells) via NFkB pathway (Wang).
Evidence Supporting this KER
Biological PlausibilityApoptosis is a basic biological phenomenon in which the cells are controlled in the atrophy of various tissues and organs through the deletion and turnover, as well as in tumor regression (Kerr JFR et al).
Empirical EvidenceMicroRNA-21 regulates the spermatogonial stem cell homeostasis, in which suppression of microRNA-21 with anti-miR-21 oligonucleotides led to apoptosis of spermatogonial stem cell-enriched germ cell cultures and the decrease in the number of spermatogonial stem cells (Niu Z et al).
Uncertainties and InconsistenciesSpermatogonial stem cell self-renewal and spermatocyte meiosis are regulated by Sertoli cell signaling, which suggests us that various pathways other than HDAC inhibition in spermatocytes or spermatogonia are involved in the spermatocyte deletion and testis atrophy/weight loss (Chen SR). It should be noted that the process of apoptosis is necessary for the meitosis of the stem cell differentiation in the testis, which remains in question for the regulation of spermatocyte deletion and testis atrophy/weight loss (Dym M).
References
Huang S et al. (2016) Knockdown of Sucla2 decreases the viability of mouse spermatocytes by inducing apoptosis through injury of the mitochondrial function of cells. Folia Histochem Cytobiol 54: 134-142
Wang C et al. (2017) CD147 regulates extrinsic apoptosis in spermatocytes by modulating NFkB signaling pathways. Oncotarget 8: 3132-3143
Kerr JFR et al. (1972) Apoptosis: a basic biological phenomenon with wide-ranging implications in tissue kinetics. Br J Cancer 26: 239-257
Niu Z et al. (2011) microRNA-21 regulates the self-renewal of mouse spermatogonial stem cells. Proc Natl Acad Sci 108: 12740-12745
Chen S and Liu Y. (2015) Regulation of spermatogonial stem cell self-renewal and spermatocyte meiosis by Sertoli cell signaling. Reproduction 149: R159-R167
Dym M. (1994) Spermatogonial stem cells of the testis. Proc Natl Acad Sci USA 91: 11287-11289
De Rooij DG et al. (2001) Proliferation and differentiation of spermatogonial stem cells. Reproduction 121: 347-354
De Rooij DG. (1998) Stem cells in the testis. Int J Exp Path 79: 67-80
List of Non Adjacent Key Event Relationships
Relationship: 1714: Histone deacetylase inhibition leads to p21 expression, increase
AOPs Referencing Relationship
AOP Name | Adjacency | Weight of Evidence | Quantitative Understanding |
---|---|---|---|
Histone deacetylase inhibition leading to testicular toxicity | non-adjacent | High | High |
Evidence Supporting Applicability of this Relationship
The exposure of 2-MAA on mouse limbs in vitro induced histone hyperacetylation and p21 expression increase (Mus musculus) (Dayan). HDAC-deficient embryonic stem cells demonstrated up-regulation of p21 in mice (Mus musculus) (Lagger). HDAC inhibitor, AR-42 induced histone hyperacetylation and p21 up-regulation in human pancreatic cancer cells (Homo sapiens) (Henderson).
Key Event Relationship Description
HDAC inhibition leads to histone hyperacetylation and p21 activation (Falkenberg KJ, 2014). HDIs-induced G1/S phase arrest occurs primarily through transcriptional changes in cell cycle regulatory genes, such as induction of the CDK inhibitors p21 (CDKN1A), p15INK4B (CDKN2B), p19INK4D (CDKN2D) and p57 (CDKN1C) (Falkenberg 2014). HDAC1-deficient embryonic stem cells showed decrease in cyclin-associated kinase activities and increase in p21WAF1/CIP1 (Lagger G). Expression of p21 is up-regulated in HDAC1-null embryos (Lagger G). The HDAC inhibitors, suberoylanilide hydroxamic acid (SAHA), trichostatin A (TSA), and MS-27-275 induced histone hyperacetylation and p21 up-regulation (Glaser). MAA up-regulated p21 mRNA level and acetylation of histone H3 and H4 (Parajuli KR).
Evidence Supporting this KER
Biological PlausibilityIn human pancreatic cancer cell lines, p21 up-regulation and histone H3 hyperacetylation by HDAC inhibitor AR-42 were observed (Henderson). Furthermore, the oral administration of AR-42 at 50 mg/kg resulted in suppression of tumor in the pancreatic cancer cell xenograft and transgenic KPfl/flC (LSL-KrasG12D; Trp53flox/flox; Pdx-1-Cre) mouse model (Henderson). The exposure of 2-methoxyacetic acid (2-MAA) induced morphological changes on embryonic forelimbs (Dayan).
Empirical EvidenceThe expression of p21 was up-regulated with 10 mM of 2-MAA, whereas ethylene glycol monomethyl ether (EGME) did not increase p21 expression (Dayan). The treatment of 2-MAA induced histone acetylation in H3K9Ac and H4K12Ac, as well as p53K379Ac (Dayan).
Uncertainties and InconsistenciesThe exposure to 2-MAA induced p53 acetylation independent of histone hyperacetylation, which demonstrates the possibility in which several pathways are activated in HDAC inhibition towards apoptosis (Dayan). It has also been shown that p21 up-regulation by sodium butyrate is p53 dependent using the Chromatin Immunoprecipitation (ChIP) assay with anti-p53 monoclonal antibody (Saldanha). ST2783, a HDI, induced acetylation of p53 (Zuco). The mechanism inducing p21 by HDAC inhibition contains several pathway cross-talk.
References
Falkenberg KJ and Johnstone RW. (2014) Histone deacetylases and their inhibitors in cancer, neurological disease and immune disorders. Nat Rev Drug Discov 13:673-691
Lagger G et al. (2002) Essential function of histone deacetylase 1 in proliferation control and CDK inhibitor repression. EMBO J 21:2672-2681
Glaser KB et al. (2003) Gene expression profiling of multiple histone deacetylase (HDAC) inhibitors: defining a common gene set produced by HDAC inhibition in T24 and MDA carcinoma cell lines. Mol Cancer Ther 2:151-163
Parajuli KR et al. (2014) Methoxyacetic acid suppresses prostate cancer cell growth by inducing growth arrest and apoptosis. Am J Clin Exp Urol 2:300-312
Henderson SE et al. (2016) Suppression of tumor growth and muscle wasting in a transgenic mouse model of pancreatic cancer by the novel histone deacetylase inhibitor AR-42. Neoplasia 18:765-774
Dayan C and Hales BF. (2014) Effects of Ethylene glycol monomethyl ether and its metabolite, 2-methoxyacetic acid, on organogenesis stage mouse limbs in vitro. Birth Defects Res 101:254-261
Saldanha SN et al. (2014) Molecular mechanisms for inhibition of colon cancer cells by combined epigenetic-modulating epigallocatechin gallate and sodium butyrate. Exp Cell Res 324:40-53
Zuco V et al. (2011) Synergistic antitumor effects of novel HDAC inhibitors and paclitaxel in vitro and in vivo. PLoS One 6:e29085
Kaur J and Tikoo K. (2013) p300/CBP dependent hyperacetylation of histone potentials anticancer activity of gefitinib nanoparticles. Biochimica et Biophysica Acta 1833:1028-1040
Relationship: 1715: Histone deacetylase inhibition leads to cell cycle disorder
AOPs Referencing Relationship
AOP Name | Adjacency | Weight of Evidence | Quantitative Understanding |
---|---|---|---|
Histone deacetylase inhibition leading to testicular toxicity | non-adjacent | High | High |
Evidence Supporting Applicability of this Relationship
MAA induced G1 cell cycle arrest in human prostate cancer cells (Homo sapiens) (Parajuli). Apicidin-induced G1 cell cycle arrest in HeLa cells (Homo sapiens) (Han).
Key Event Relationship Description
Apicidin [cyclo(N-O-methyl-L-tryptophanyl-L-isoleucinyl-D-pipecolinyl-L-2-amino-8-oxodecanoyl)], a fungal metabolite HDI, inhibits proliferation of tumor cells via p21 induction (Han JW). Apicidin induced hyperacetylation of histone H4, up-regulation of p21, and G0/G1 cell cycle arrest in HeLa cells (Han JW). HDAC inhibition leads to cell cycle arrest, where G1/S phase arrest occurs with up-regulation of p21 (Falkenberg).
Evidence Supporting this KER
Biological PlausibilityLoss of HDAC1 in mouse embryonic stem (ES) cells has demonstrated the acetylation of histones H3 and H4, up-regulation of cyclin-dependent kinase inhibitors p21WAF1/CIP1 and p27KIP1 and inhibition of proliferation (Lagger).
Empirical EvidenceIn HDAC1-/- fibroblast lines, increase in the amount of cells in G1 phase and decrease in the amount of cells in S phase were observed, which indicates the importance of HDAC inhibition in cell cycle regulation [Zupkovitz]. HDAC inhibition with SAHA, TSA and MS-27-275 induced acetylation of histone H4, up-regulation of cyclin-dependent kinase inhibitor p21, and inhibition of proliferation in human bladder carcinoma cells (Glaser).
Uncertainties and InconsistenciesMAA, a HDI, induced cell cycle arrest and up-regulation of p21 expression, and inhibited prostate cancer cell growth (Parajuli). The involvement of p53/p63/p73 in up-regulation of p21 induced by HDAC inhibition is not fully elucidated, where time course of the p21 and p53/p63/p73 mRNA expression has demonstrated the cell-line specific differences in the responses in 4 human prostate cancer cell lines LNCaP, C4-2B, PC-3 and DU-145 (Parajuli).
References
Han JW et al. (2000) Apicidin, a histone deacetylase inhibitor, inhibits proliferation of tumor cells via induction of p21WAF1/Cip1 and gelsolin. Cancer Res 60:6068-6074
Falkenberg KJ and Johnstone RW. (2014) Histone deacetylases and their inhibitors in cancer, neurological disease and immune disorders. Nat Rev Drug Discov 13:673-691
Lagger G et al. (2002) Essential function of histone deacetylase 1 in proliferation control and CDK inhibitor repression. EMBO J 21:2672-2681
Zupkovitz G et al. (2010) The cyclin-dependent kinase inhibitor p21 is a crucial target for histone deacetylase 1 as a regulator of cellular proliferation. Mol Cell Biol 30:1171-1181
Glaser KB et al. (2003) Gene expression profiling of multiple histone deacetylase (HDAC) inhibitors: defining a common gene set produced by HDAC inhibition in T24 and MDA carcinoma cell lines. Mol Cancer Ther 2:151-163
Parajuli KR et al. (2014) Methoxyacetic acid suppresses prostate cancer cell growth by inducing growth arrest and apoptosis. Am J Clin Exp Urol 2:300-312
Relationship: 1716: Histone deacetylase inhibition leads to Apoptosis
AOPs Referencing Relationship
AOP Name | Adjacency | Weight of Evidence | Quantitative Understanding |
---|---|---|---|
Histone deacetylase inhibition leading to testicular toxicity | non-adjacent | High | High |
Evidence Supporting Applicability of this Relationship
AR-42 inhibited proliferation of human pancreatic cancer cells (Homo sapiens) (Henderson). SAHA inhibited proliferation of NHDF (Homo sapiens) (Glaser). MAA induced apoptosis in human prostate cancer cell lines (Homo sapiens) (Parajuli). HDAC-deficient mouse ES cells showed decrease in proliferation (Mus musculus) (Lagger).
Key Event Relationship Description
HDAC inhibition leads to cell death through the apoptotic pathways (Falkenberg). Intrinsic apoptosis pathway requires BH3-only proteins, and BCL-2 protein overexpression inhibits apoptosis (Falkenberg). MAA-induced spermatocyte death is associated with histone acetylation increase (Wade 2008). The HDAC inhibition induced p21 up-regulation, histone acetylation increase, and apoptosis markers such as BAK overexpression and suppression of phosphorylated AKT (Henderson). AR-42 inhibited the expression of BCL-XL, an anti-apoptotic molecule in AsPC-1 tumor homogenates collected after 21 days of treatment (Henderson).
Evidence Supporting this KER
Biological PlausibilityOral administration of AR-42, a HDAC inhibitor, at 50 mg/kg in human pancreatic cancer cell AsPC-1 xenograft and KPfl/flC models resulted in the suppression of tumor (Henderson).
Empirical EvidenceHDAC-deficient mouse embryonic stem (ES) cells showed reduced proliferation rates with up-regulation of cyclin-dependent kinase inhibitors p21 and p27 (Lagger). HDAC-null embryoid bodies showed a reduced inner cell mass and reduced colony formation (Lagger). HDAC inhibition by suberoylanilide hydroxamic acid (SAHA) inhibited proliferation of normal human dermal fibroblasts (NHDF) (Glaser).
Uncertainties and InconsistenciesMethoxyacetic acid (MAA), a HDAC inhibitor, induced cell cycle arrest, apoptosis, leading to suppression of human prostate cancer cell growth (Parajuli). It is not fully elucidated whether MAA-induced apoptosis is involved in p53/p63/p73 pathway (Parajuli).
References
Falkenberg KJ and Johnstone RW. (2014) Histone deacetylases and their inhibitors in cancer, neurological disease and immune disorders. Nat Rev Drug Discov 13:673-691
Wade MG et al. (2008) Methoxyacetic acid-induced spermatocyte death is associated with histone hyperacetylation in rats. Biol Reprod 78:822-831
Henderson SE et al. (2016) Suppression of tumor growth and muscle wasting in a transgenic mouse model of pancreatic cancer by the novel histone deacetylase inhibitor AR-42. Neoplasia 18:765-774
Lagger G et al. (2002) Essential function of histone deacetylase 1 in proliferation control and CDK inhibitor repression. EMBO J 21:2672-2681
Glaser KB et al. (2003) Gene expression profiling of multiple histone deacetylase (HDAC) inhibitors: defining a common gene set produced by HDAC inhibition in T24 and MDA carcinoma cell lines. Mol Cancer Ther 2:151-163
Parajuli KR et al. (2014) Methoxyacetic acid suppresses prostate cancer cell growth by inducing growth arrest and apoptosis. Am J Clin Exp Urol 2:300-312
Relationship: 1717: Histone deacetylase inhibition leads to testicular toxicity
AOPs Referencing Relationship
AOP Name | Adjacency | Weight of Evidence | Quantitative Understanding |
---|---|---|---|
Histone deacetylase inhibition leading to testicular toxicity | non-adjacent | High | High |
Evidence Supporting Applicability of this Relationship
The administration of di(2-ethylhexyl)-phthalate induced testis atrophy in rats (Rattus norvegicus) (Oishi 1994). The administration of butylparaben resulted in decrease in sperm counts in rats (Rattus norvegicus) (Oishi 2001).
Key Event Relationship Description
MAA induced spermatocyte death with an association of histone acetylation increase (Wade 2008). Doxorubicin, which has a testicular toxicity, induced caspase 3 activation and g-H2AX induction, apoptosis markers, in human lung cancer A549 cells (El-Awady, Yamazoe). Doxorubicin-resistant A549 cells showed reduced expression of HDAC1, 3 and 4 compared to A549 cells (El-Awady). Methoxyacetic acid (MAA)-induced apoptosis in male germ cells was modulated by Sertoli cells via P/Q type voltage-operated calcium channels (Barone F).
Evidence Supporting this KER
Biological PlausibilityThe p.o. administration of ethylene glycol monomethyl (500 mg/kg/day) in rats induced the testis or liver organ weight loss on 2, 4, 7 and 11 days or 24 hrs and 2, 4 and 7 days after treatment, respectively (Foster PMD 1983). The investigation of 2-methoxyethanol (2-ME)-induced testicular toxicity has revealed that the conversion of 2-ME to methoxyacetic acid (MAA) is required in 2-ME-induced testicular toxicity (Moss).
Empirical EvidenceMAA (300 mg/kg) induced body weight loss and testicular toxicity measured with testis weight loss (Miller). MAA induced apoptosis and degeneration in spermatocytes in human testicular tissue and 25-day rat seminiferous tubule cultures (Li).
Uncertainties and InconsistenciesMethyl and ethyl esters of p-hydroxybenzoic acid did not show spermatotoxic effects in rats (Rattus norvegicus) (Oishi 2004). It is reported that HDAC inhibition leads to teratogenic toxicity, whereas the correlation with testicular toxicity and teratogenic toxicity by HDAC inhibition is not fully understood (Menegola). The oral administration of vorinostat (SAHA), a HDAC inhibitor, in Sprague-Dawley rats showed no indication of reproductive toxicity in drug-treated male rats, which suggested the involvement of some compensation mechanisms or digestion (Wise).
References
Wade MG et al. (2008) Methoxyacetic acid-induced spermatocyte death is associated with histone hyperacetylation in rats. Biol Reprod 78:822-831
El-Awady RA et al. (2015) Epigenetics and miRNA as predictive markers and targets for lung cancer chemotherapy. Cancer Biol Ther 16: 1056-1070
Yamazoe Y. et al. (2015) Embryo- and testicular-toxicities of methoxyacetate and the related: a review on possible roles of one-carbon transfer and histone modification. Food Safety 3:92-107
Barone F. et al. (2005) Modulation of MAA-induced apoptosis in male germ cells: role of Sertoli cell P/Q-type calcium channels. Reprod Biol Endocrinol 3:13
Foster PM et al. (1983) Testicular toxicity of ethylene glycol monomethyl and monoethyl ethers in the rat. Toxicol Appl Pharmacol 69:385-399
Moss EJ et al. The role of metabolism in 2-methoxyethanol-induced testicular toxicity. Toxicol Appl Pharmacol 79:480-489
Miller RR et al. (1982) Toxicity of methoxyacetic acid in rats. Fundam Appl Toxicol 2: 158-160
Li LH et al. (1996) 2-Methoxyacetic acid (MAA)-induced spermatocyte apoptosis in human and rat testes: an in vitro comparison. J Androl 17: 538-549
Oishi S. (2004) Lack of spermatotoxic effects of methyl and ethyl esters of p-hydroxybenzoic acid in rats. Food Chem Tox 42: 1845-1849
Menegola E et al. (2006) Inhibition of histone deacetylase as a new mechanism of teratogensis. Birth Defects Res 78: 345-353
Wise LD et al. (2008) Assessment of female and male fertileity in Sprague-Dawley rats administered vorinostat, a histone deacetylase inhibitor. Birth Defects Res B Dev Reprod Toxicol 83: 19-26
Foster PM et al. (1984) Testicular toxicity produced by ethylene glycol monomethyl and monoethyl esters in the rat. Environ Health Perspect 57: 207-217
Oishi S. (1994) Prevention of Di(2-ethylhexyl)phthalate-induced testicular atrophy in rats by co-administration of the vitamin B12 derivative denosylcobalamin. Arch Environ Contam Toxicol 26: 497-503
Oishi S. (2001) Effects of butylparaben on the male reproductive system in rats. Tox Industr Health 17: 31-39